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Contemporaneous radiations of fungi and plants linked to symbiosis

Nature communications, 2018-12, Vol.9 (1), p.5451-11, Article 5451

2018

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AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

Bioinformatics, 2008-02, Vol.24 (4), p.581-583

2008

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BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Systematic biology, 2012-01, Vol.61 (1), p.170-173

2012

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Estimation of speciation times under the multispecies coalescent

Bioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5182-5190

2022

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BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Systematic biology, 2019-11, Vol.68 (6), p.1052

2019

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Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

Systematic biology, 2001-08, Vol.50 (4), p.525-539

2001

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Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family

Zoological journal of the Linnean Society, 2018-01, Vol.182 (1), p.50-75

2018

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Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics

Journal of mammalian evolution, 1997-06, Vol.4 (2), p.77-86

1997

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Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar’s forests past

Proceedings of the National Academy of Sciences - PNAS, 2016-07, Vol.113 (29), p.8049-8056

2016

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Phycas: Software for Bayesian Phylogenetic Analysis

Systematic biology, 2015-05, Vol.64 (3), p.525-531

2015

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Natural Hybridization between Genera That Diverged from Each Other Approximately 60 Million Years Ago

The American naturalist, 2015-03, Vol.185 (3), p.433-442

2015

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Evolution of the mitochondrial cytochrome oxidase II gene in collembola

Journal of molecular evolution, 1997-02, Vol.44 (2), p.145-158

1997

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Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA

Molecular phylogenetics and evolution, 2004-11, Vol.33 (2), p.440-451

2004

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Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation

Molecular biology and evolution, 2005-06, Vol.22 (6), p.1386-1392

2005

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Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions About Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?

Systematic biology, 2001-09, Vol.50 (5), p.723-729

2001

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Taxon sampling revisited

Nature (London), 1999-03, Vol.398 (6725), p.299-300

1999

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Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

Systematic biology, 2001-08, Vol.50 (4), p.525-539

2001

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The Akaike Information Criterion Will Not Choose the No Common Mechanism Model

Systematic biology, 2010-07, Vol.59 (4), p.477-485

2010

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A Fast Method for Approximating Maximum Likelihoods of Phylogenetic Trees from Nucleotide Sequences

Systematic biology, 1998-03, Vol.47 (1), p.77-89

1998

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Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

Genome research, 2011-06, Vol.21 (6), p.850

2011

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Partitioning and Combining Data in Phylogenetic Analysis

Systematic biology, 1993-09, Vol.42 (3), p.384

1993

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Hobgoblin of phylogenetics?

Nature (London), 1994-06, Vol.369 (6479), p.363-364

1994

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Searching for Phylogenetic Trees under the Frequency Parsimony Criterion: An Approximation Using Generalized Parsimony

Systematic biology, 1997-03, Vol.46 (1), p.211-215

1997

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The Topology-Dependent Permutation Test for Monophyly Does Not Test for Monophyly

Systematic biology, 1996-12, Vol.45 (4), p.575-579

1996

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The Effect of Taxon Sampling on Estimating Rate Heterogeneity Parameters of Maximum-Likelihood Models

Molecular biology and evolution, 1999-10, Vol.16 (10), p.1347-1356

1999

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Contemporaneous radiations of fungi and plants linked to symbiosis

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Estimation of speciation times under the multispecies coalescent

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family

Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics

Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar’s forests past

Phycas: Software for Bayesian Phylogenetic Analysis

Natural Hybridization between Genera That Diverged from Each Other Approximately 60 Million Years Ago

Evolution of the mitochondrial cytochrome oxidase II gene in collembola

Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA

Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation

Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions About Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?

Taxon sampling revisited

Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

The Akaike Information Criterion Will Not Choose the No Common Mechanism Model

A Fast Method for Approximating Maximum Likelihoods of Phylogenetic Trees from Nucleotide Sequences

Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

Partitioning and Combining Data in Phylogenetic Analysis

Hobgoblin of phylogenetics?

Searching for Phylogenetic Trees under the Frequency Parsimony Criterion: An Approximation Using Generalized Parsimony

The Topology-Dependent Permutation Test for Monophyly Does Not Test for Monophyly

The Effect of Taxon Sampling on Estimating Rate Heterogeneity Parameters of Maximum-Likelihood Models

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