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CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning

Methods (San Diego, Calif.), 2021-05, Vol.189, p.95-103

2021

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miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data

Bioinformatics (Oxford, England), 2014-10, Vol.30 (19), p.2837-2839

2014

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Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning

BMC biology, 2021-11, Vol.19 (1), p.250-250, Article 250

2021

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Phage family classification under Caudoviricetes : A review of current tools using the latest ICTV classification framework

Frontiers in microbiology, 2022-12, Vol.13, p.1032186-1032186

2022

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De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding

Bioinformatics, 2018-09, Vol.34 (17), p.2927-2935

2018

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Reconstructing 16S rRNA genes in metagenomic data

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i35-i43

2015

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Fast and accurate microRNA search using CNN

BMC bioinformatics, 2019-12, Vol.20 (Suppl 23), p.646-646, Article 646

2019

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VirStrain: a strain identification tool for RNA viruses

Genome Biology, 2022-01, Vol.23 (1), p.38-38, Article 38

2022

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Air-stable all-inorganic perovskite quantum dot inks for multicolor patterns and white LEDs

Journal of materials science, 2019-05, Vol.54 (9), p.6917-6929

2019

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Ribosomal Database Project: data and tools for high throughput rRNA analysis

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D633-D642

2014

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Current knowledge of COVID-19 and infection prevention and control strategies in healthcare settings: A global analysis

Infection control and hospital epidemiology, 2020-10, Vol.41 (10), p.1196-1206

2020

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FunGene: the functional gene pipeline and repository

Frontiers in microbiology, 2013, Vol.4, p.291-291

2013

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Improving protein domain classification for third-generation sequencing reads using deep learning

BMC genomics, 2021-04, Vol.22 (1), p.251-251, Article 251

2021

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HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors

BMC bioinformatics, 2011-05, Vol.12 (1), p.198-198, Article 198

2011

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High-resolution strain-level microbiome composition analysis from short reads

Microbiome, 2023-08, Vol.11 (1), p.1-183, Article 183

2023

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Improving the impact of non-pharmaceutical interventions during COVID-19: examining the factors that influence engagement and the impact on individuals

BMC infectious diseases, 2020-08, Vol.20 (1), p.607-607, Article 607

2020

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Efficacy and safety of new anti-CD20 monoclonal antibodies versus rituximab for induction therapy of CD20+ B-cell non-Hodgkin lymphomas: a systematic review and meta-analysis

Scientific reports, 2021-02, Vol.11 (1), p.3255-14, Article 3255

2021

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MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations

Plant physiology (Bethesda), 2014-02, Vol.164 (2), p.513-524

2014

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Impact of Multidrug Resistance on Tuberculosis Recurrence and Long-Term Outcome in China

PloS one, 2017-01, Vol.12 (1), p.e0168865-e0168865

2017

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TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data

BMC bioinformatics, 2019-06, Vol.20 (1), p.305-305, Article 305

2019

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Accelerating de novo SINE annotation in plant and animal genomes

Mobile DNA, 2024-10, Vol.15 (1), p.24-7, Article 24

2024

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The insect-phase gRNA transcriptome in Trypanosoma brucei

Nucleic acids research, 2014-02, Vol.42 (3), p.1873-1886

2014

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A binning tool to reconstruct viral haplotypes from assembled contigs

BMC bioinformatics, 2019-11, Vol.20 (1), p.544-13, Article 544

2019

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Improving the sensitivity of long read overlap detection using grouped short k-mer matches

BMC genomics, 2019-04, Vol.20 (Suppl 2), p.190-190, Article 190

2019

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GPRED-GC: a Gene PREDiction model accounting for 5 ' - 3 ' GC gradient

BMC bioinformatics, 2019-12, Vol.20 (Suppl 15), p.482-482, Article 482

2019

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CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning

miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data

Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning

Phage family classification under Caudoviricetes : A review of current tools using the latest ICTV classification framework

De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding

Reconstructing 16S rRNA genes in metagenomic data

Fast and accurate microRNA search using CNN

VirStrain: a strain identification tool for RNA viruses

Air-stable all-inorganic perovskite quantum dot inks for multicolor patterns and white LEDs

Ribosomal Database Project: data and tools for high throughput rRNA analysis

Current knowledge of COVID-19 and infection prevention and control strategies in healthcare settings: A global analysis

FunGene: the functional gene pipeline and repository

Improving protein domain classification for third-generation sequencing reads using deep learning

HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors

High-resolution strain-level microbiome composition analysis from short reads

Improving the impact of non-pharmaceutical interventions during COVID-19: examining the factors that influence engagement and the impact on individuals

Efficacy and safety of new anti-CD20 monoclonal antibodies versus rituximab for induction therapy of CD20+ B-cell non-Hodgkin lymphomas: a systematic review and meta-analysis

MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations

Impact of Multidrug Resistance on Tuberculosis Recurrence and Long-Term Outcome in China

TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data

Accelerating de novo SINE annotation in plant and animal genomes

The insect-phase gRNA transcriptome in Trypanosoma brucei

A binning tool to reconstruct viral haplotypes from assembled contigs

Improving the sensitivity of long read overlap detection using grouped short k-mer matches

GPRED-GC: a Gene PREDiction model accounting for 5 ' - 3 ' GC gradient

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