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Dimensional Reduction for the General Markov Model on Phylogenetic Trees

Bulletin of mathematical biology, 2017-03, Vol.79 (3), p.619-634

Sumner, Jeremy G.

2017

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Tensor Rank, Invariants, Inequalities, and Applications

SIAM journal on matrix analysis and applications, 2013-01, Vol.34 (3), p.1014-1045

2013

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Correction to: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model

Journal of mathematical biology, 2021-06, Vol.82 (7), p.68-68, Article 68

2021

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Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics

Journal of physics. A, Mathematical and theoretical, 2019-11, Vol.52 (45), p.453001

2019

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A New Hierarchy of Phylogenetic Models Consistent with Heterogeneous Substitution Rates

Systematic biology, 2015-07, Vol.64 (4), p.638-650

2015

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A representation-theoretic approach to the calculation of evolutionary distance in bacteria

Journal of physics. A, Mathematical and theoretical, 2017-08, Vol.50 (33), p.335601

2017

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The Ancient Operational Code is Embedded in the Amino Acid Substitution Matrix and aaRS Phylogenies

Journal of molecular evolution, 2020-03, Vol.88 (2), p.136-150

2020

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Lie geometry of 2×2 Markov matrices

Journal of theoretical biology, 2013-06, Vol.327, p.88-90

Sumner, Jeremy G.

2013

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Distinguishing Between Convergent Evolution and Violation of the Molecular Clock for Three Taxa

Systematic biology, 2018-09, Vol.67 (5), p.905-915

2018

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Lie-Markov Models Derived from Finite Semigroups

Bulletin of mathematical biology, 2019-02, Vol.81 (2), p.361-383

2019

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The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives

Journal of mathematical biology, 2020-08, Vol.81 (2), p.549-573

2020

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Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants

Journal of mathematical biology, 2017-12, Vol.75 (6-7), p.1619-1654

2017

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Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model

Journal of mathematical biology, 2016-08, Vol.73 (2), p.259-282

2016

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Lie Markov models with purine/pyrimidine symmetry

Journal of mathematical biology, 2015-03, Vol.70 (4), p.855-891

2015

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Is the General Time-Reversible Model Bad for Molecular Phylogenetics?

Systematic biology, 2012-12, Vol.61 (6), p.1069-1074

2012

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Low-Parameter Phylogenetic Inference Under the General Markov Model

Systematic biology, 2013-01, Vol.62 (1), p.78-92

2013

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A tensorial approach to the inversion of group-based phylogenetic models

BMC evolutionary biology, 2014-12, Vol.14 (1), p.236, Article 236

2014

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Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels

IEEE/ACM transactions on computational biology and bioinformatics, 2012-05, Vol.9 (3), p.828-836

2012

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MULTIPLICATIVELY CLOSED MARKOV MODELS MUST FORM LIE ALGEBRAS

The ANZIAM journal, 2017-10, Vol.59 (2), p.240-246

SUMNER, JEREMY G.

2017

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Multiplicatively closed Markov models must form Lie algebras

ANZIAM Journal, 2018-01, Vol.59, p.240

Sumner, Jeremy G.

2018

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Adventures in invariant theory

ANZIAM Journal, 2015-01, Vol.56, p.105

2015

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Lie Markov models

Journal of theoretical biology, 2012-04, Vol.298, p.16-31

2012

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The Remarkable Spin-down and Ultrafast Outflows of the Highly Pulsed Supersoft Source of Nova Herculis 2021

Astrophysical journal. Letters, 2021-12, Vol.922 (2), p.L42

2021

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Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood

Scientific reports, 2020-07, Vol.10 (1), p.10902, Article 10902

2020

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Author Correction: Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood

Scientific reports, 2020-07, Vol.10 (1), p.12524-12524, Article 12524

2020

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Dimensional Reduction for the General Markov Model on Phylogenetic Trees

Tensor Rank, Invariants, Inequalities, and Applications

Correction to: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model

Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics

A New Hierarchy of Phylogenetic Models Consistent with Heterogeneous Substitution Rates

A representation-theoretic approach to the calculation of evolutionary distance in bacteria

The Ancient Operational Code is Embedded in the Amino Acid Substitution Matrix and aaRS Phylogenies

Lie geometry of 2×2 Markov matrices

Distinguishing Between Convergent Evolution and Violation of the Molecular Clock for Three Taxa

Lie-Markov Models Derived from Finite Semigroups

The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives

Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants

Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model

Lie Markov models with purine/pyrimidine symmetry

Is the General Time-Reversible Model Bad for Molecular Phylogenetics?

Low-Parameter Phylogenetic Inference Under the General Markov Model

A tensorial approach to the inversion of group-based phylogenetic models

Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels

MULTIPLICATIVELY CLOSED MARKOV MODELS MUST FORM LIE ALGEBRAS

Multiplicatively closed Markov models must form Lie algebras

Adventures in invariant theory

Lie Markov models

The Remarkable Spin-down and Ultrafast Outflows of the Highly Pulsed Supersoft Source of Nova Herculis 2021

Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood

Author Correction: Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood

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