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Sequence-based engineering of pH-sensitive antibodies for tumor targeting or endosomal recycling applications

mAbs, 2024-01, Vol.16 (1), p.2404064

2024

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Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2

Scientific reports, 2023-09, Vol.13 (1), p.15107-14, Article 15107

2023

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Editorial: Progress and challenges in computational structure-based design and development of biologic drugs

Frontiers in molecular biosciences, 2024-02, Vol.11, p.1360267

2024

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Structure-based dual affinity optimization of a SARS-CoV-1/2 cross-reactive single-domain antibody

PloS one, 2022-03, Vol.17 (3), p.e0266250

2022

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Structure-based engineering of pH-dependent antibody binding for selective targeting of solid-tumor microenvironment

mAbs, 2020-01, Vol.12 (1), p.1682866

2020

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Humanization of Camelid Single-Domain Antibodies

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2446, p.299

Sulea, Traian

2022

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Coevolved Canonical Loops Conformations of Single-Domain Antibodies: A Tale of Three Pockets Playing Musical Chairs

Frontiers in immunology, 2022-06, Vol.13, p.884132-884132

2022

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The Papain-Like Protease from the Severe Acute Respiratory Syndrome Coronavirus Is a Deubiquitinating Enzyme

Journal of Virology, 2005-12, Vol.79 (24), p.15199-15208

2005

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Solvated Interaction Energy (SIE) for Scoring Protein–Ligand Binding Affinities. 2. Benchmark in the CSAR-2010 Scoring Exercise

Journal of chemical information and modeling, 2011-09, Vol.51 (9), p.2066-2081

2011

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Assisted Design of Antibody and Protein Therapeutics (ADAPT)

PloS one, 2017-07, Vol.12 (7), p.e0181490

2017

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Redesigning an antibody H3 loop by virtual screening of a small library of human germline-derived sequences

Scientific reports, 2021-11, Vol.11 (1), p.21362-21362, Article 21362

2021

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Solvated Interaction Energy (SIE) for Scoring Protein−Ligand Binding Affinities. 1. Exploring the Parameter Space

Journal of chemical information and modeling, 2007-01, Vol.47 (1), p.122-133

2007

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A glyco-engineering approach for site-specific conjugation to Fab glycans

mAbs, 2023, Vol.15 (1), p.2149057

2023

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Assessment of Solvated Interaction Energy Function for Ranking Antibody–Antigen Binding Affinities

Journal of chemical information and modeling, 2016-07, Vol.56 (7), p.1292-1303

2016

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Brain Delivery of IGF1R5, a Single-Domain Antibody Targeting Insulin-like Growth Factor-1 Receptor

Pharmaceutics, 2022-07, Vol.14 (7), p.1452

2022

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Binding and functional profiling of antibody mutants guides selection of optimal candidates as antibody drug conjugates

PloS one, 2019-12, Vol.14 (12), p.e0226593

2019

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Programmable Attenuation of Antigenic Sensitivity for a Nanobody-Based EGFR Chimeric Antigen Receptor Through Hinge Domain Truncation

Frontiers in immunology, 2022-07, Vol.13, p.864868-864868

2022

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Molecular Dynamics—Solvated Interaction Energy Studies of Protein–Protein Interactions: The MP1–p14 Scaffolding Complex

Journal of molecular biology, 2008-06, Vol.379 (4), p.787-802

2008

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A Rational Engineering Strategy for Designing Protein A-Binding Camelid Single-Domain Antibodies

PloS one, 2016-09, Vol.11 (9), p.e0163113

2016

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High incidence of ubiquitin-like domains in human ubiquitin-specific proteases

Proteins, structure, function, and bioinformatics, 2007-10, Vol.69 (1), p.1-7

2007

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Effects of Two Soluble ACE2-Fc Variants on Blood Pressure and Albuminuria in Hypertensive Mice: Research Letter

Canadian journal of kidney health and disease, 2023-01, Vol.10, p.20543581231207146-20543581231207146

2023

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Solvation models: theory and validation

Current pharmaceutical design, 2014-01, Vol.20 (20), p.3266-3280

2014

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Solvated interaction energy: from small-molecule to antibody drug design

Frontiers in molecular biosciences, 2023-06, Vol.10, p.1210576-1210576

2023

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Exploring rigid-backbone protein docking in biologics discovery: a test using the DARPin scaffold

Frontiers in molecular biosciences, 2023-08, Vol.10, p.1253689-1253689

2023

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Binding symmetry and surface flexibility mediate antibody self-association

mAbs, 2019-10, Vol.11 (7), p.1300-1318

2019

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Sequence-based engineering of pH-sensitive antibodies for tumor targeting or endosomal recycling applications

Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2

Editorial: Progress and challenges in computational structure-based design and development of biologic drugs

Structure-based dual affinity optimization of a SARS-CoV-1/2 cross-reactive single-domain antibody

Structure-based engineering of pH-dependent antibody binding for selective targeting of solid-tumor microenvironment

Humanization of Camelid Single-Domain Antibodies

Coevolved Canonical Loops Conformations of Single-Domain Antibodies: A Tale of Three Pockets Playing Musical Chairs

The Papain-Like Protease from the Severe Acute Respiratory Syndrome Coronavirus Is a Deubiquitinating Enzyme

Solvated Interaction Energy (SIE) for Scoring Protein–Ligand Binding Affinities. 2. Benchmark in the CSAR-2010 Scoring Exercise

Assisted Design of Antibody and Protein Therapeutics (ADAPT)

Redesigning an antibody H3 loop by virtual screening of a small library of human germline-derived sequences

Solvated Interaction Energy (SIE) for Scoring Protein−Ligand Binding Affinities. 1. Exploring the Parameter Space

A glyco-engineering approach for site-specific conjugation to Fab glycans

Assessment of Solvated Interaction Energy Function for Ranking Antibody–Antigen Binding Affinities

Brain Delivery of IGF1R5, a Single-Domain Antibody Targeting Insulin-like Growth Factor-1 Receptor

Binding and functional profiling of antibody mutants guides selection of optimal candidates as antibody drug conjugates

Programmable Attenuation of Antigenic Sensitivity for a Nanobody-Based EGFR Chimeric Antigen Receptor Through Hinge Domain Truncation

Molecular Dynamics—Solvated Interaction Energy Studies of Protein–Protein Interactions: The MP1–p14 Scaffolding Complex

A Rational Engineering Strategy for Designing Protein A-Binding Camelid Single-Domain Antibodies

High incidence of ubiquitin-like domains in human ubiquitin-specific proteases

Effects of Two Soluble ACE2-Fc Variants on Blood Pressure and Albuminuria in Hypertensive Mice: Research Letter

Solvation models: theory and validation

Solvated interaction energy: from small-molecule to antibody drug design

Exploring rigid-backbone protein docking in biologics discovery: a test using the DARPin scaffold

Binding symmetry and surface flexibility mediate antibody self-association

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