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Deciphering cell lineage specification of human lung adenocarcinoma with single-cell RNA sequencing

Nature communications, 2021-11, Vol.12 (1), p.6500-6500, Article 6500

2021

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An update of DIVERGE software for functional divergence analysis of protein family

Molecular biology and evolution, 2013-07, Vol.30 (7), p.1713-1719

2013

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DeepHLApan: A Deep Learning Approach for Neoantigen Prediction Considering Both HLA-Peptide Binding and Immunogenicity

Frontiers in immunology, 2019-11, Vol.10, p.2559-2559

2019

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Phosphotyrosine signalling and the origin of animal multicellularity

Proceedings of the Royal Society. B, Biological sciences, 2017-08, Vol.284 (1860), p.20170681-20170681

Royal Society (Great Britain), 2017

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TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis

Genomics, proteomics & bioinformatics, 2018-08, Vol.16 (4), p.276-282

2018

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Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome

BMC genomics, 2011-12, Vol.12 Suppl 5 (Suppl 5), p.S15-S15, Article S15

2011

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Comprehensive analysis reveals distinct mutational signature and its mechanistic insights of alcohol consumption in human cancers

Briefings in bioinformatics, 2021-05, Vol.22 (3)

2021

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Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNA

BMC medicine, 2022-11, Vol.20 (1), p.458-458, Article 458

2022

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Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes

Scientific reports, 2019-06, Vol.9 (1), p.8205, Article 8205

2019

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The Impact of DNA Methylation Dynamics on the Mutation Rate During Human Germline Development

G3 : genes - genomes - genetics, 2020-09, Vol.10 (9), p.3337-3346

2020

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Early detection and stratification of lung cancer aided by a cost-effective assay targeting circulating tumor DNA (ctDNA) methylation

Respiratory research, 2023-06, Vol.24 (1), p.163-163, Article 163

2023

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Enhancing the differential diagnosis of small pulmonary nodules: a comprehensive model integrating plasma methylation, protein biomarkers, and LDCT imaging features

Journal of translational medicine, 2024-10, Vol.22 (1), p.984-14, Article 984

2024

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Blood leukocytes as a non-invasive diagnostic tool for thyroid nodules: a prospective cohort study

BMC medicine, 2024-04, Vol.22 (1), p.147-15, Article 147

2024

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Tissue-driven hypothesis of genomic evolution and sequence-expression correlations

Proceedings of the National Academy of Sciences - PNAS, 2007-02, Vol.104 (8), p.2779-2784

2007

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Cross-platform comparisons for targeted bisulfite sequencing of MGISEQ-2000 and NovaSeq6000

Clinical epigenetics, 2023-08, Vol.15 (1), p.1-130, Article 130

2023

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Conservation and divergence of DNA methylation in eukaryotes: New insights from single base-resolution DNA methylomes

Epigenetics, 2011-02, Vol.6 (2), p.134-140

2011

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Identification of DNA methylation signatures for hepatocellular carcinoma detection and microvascular invasion prediction

European journal of medical research, 2022-12, Vol.27 (1), p.1-276, Article 276

2022

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TSNAD: an integrated software for cancer somatic mutation and tumour-specific neoantigen detection

Royal Society open science, 2017-04, Vol.4 (4), p.170050-170050

2017

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Fecal Multidimensional Assay for Non-Invasive Detection of Colorectal Cancer: Fecal Immunochemical Test, Stool DNA Mutation, Methylation, and Intestinal Bacteria Analysis

Frontiers in oncology, 2021-02, Vol.11, p.643136-643136

2021

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Whole-exome sequencing study of hypospadias

iScience, 2023-05, Vol.26 (5), p.106663-106663, Article 106663

2023

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Identification of functional mutations in GATA4 in patients with congenital heart disease

PloS one, 2013-04, Vol.8 (4), p.e62138

2013

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Comparative Transcriptome Analyses Reveal the Role of Conserved Function in Electric Organ Convergence Across Electric Fishes

Frontiers in genetics, 2019-07, Vol.10, p.664-664

2019

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Genome-Wide Analysis of DNA Methylation in Human Amnion

TheScientificWorld, 2013-01, Vol.2013 (2013), p.1-11

2013

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Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evolution of the Large Crustacean Eriocheir sinensis

Genomics, proteomics & bioinformatics, 2020-08, Vol.18 (4), p.443-454

2020

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Paralog-divergent Features May Help Reduce Off-target Effects of Drugs： Hints from Glucagon Subfamily Analysis

Genomics, proteomics & bioinformatics, 2017-08, Vol.15 (4), p.246-254

2017

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Deciphering cell lineage specification of human lung adenocarcinoma with single-cell RNA sequencing

An update of DIVERGE software for functional divergence analysis of protein family

DeepHLApan: A Deep Learning Approach for Neoantigen Prediction Considering Both HLA-Peptide Binding and Immunogenicity

Phosphotyrosine signalling and the origin of animal multicellularity

TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis

Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome

Comprehensive analysis reveals distinct mutational signature and its mechanistic insights of alcohol consumption in human cancers

Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNA

Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes

The Impact of DNA Methylation Dynamics on the Mutation Rate During Human Germline Development

Early detection and stratification of lung cancer aided by a cost-effective assay targeting circulating tumor DNA (ctDNA) methylation

Enhancing the differential diagnosis of small pulmonary nodules: a comprehensive model integrating plasma methylation, protein biomarkers, and LDCT imaging features

Blood leukocytes as a non-invasive diagnostic tool for thyroid nodules: a prospective cohort study

Tissue-driven hypothesis of genomic evolution and sequence-expression correlations

Cross-platform comparisons for targeted bisulfite sequencing of MGISEQ-2000 and NovaSeq6000

Conservation and divergence of DNA methylation in eukaryotes: New insights from single base-resolution DNA methylomes

Identification of DNA methylation signatures for hepatocellular carcinoma detection and microvascular invasion prediction

TSNAD: an integrated software for cancer somatic mutation and tumour-specific neoantigen detection

Fecal Multidimensional Assay for Non-Invasive Detection of Colorectal Cancer: Fecal Immunochemical Test, Stool DNA Mutation, Methylation, and Intestinal Bacteria Analysis

Whole-exome sequencing study of hypospadias

Identification of functional mutations in GATA4 in patients with congenital heart disease

Comparative Transcriptome Analyses Reveal the Role of Conserved Function in Electric Organ Convergence Across Electric Fishes

Genome-Wide Analysis of DNA Methylation in Human Amnion

Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evolution of the Large Crustacean Eriocheir sinensis

Paralog-divergent Features May Help Reduce Off-target Effects of Drugs： Hints from Glucagon Subfamily Analysis

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