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Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

Journal of the Royal Society interface, 2009-02, Vol.6 (31), p.187

2009

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Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling

Cell reports (Cambridge), 2016-06, Vol.15 (11), p.2524-2535

2016

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Decomposing Noise in Biochemical Signaling Systems Highlights the Role of Protein Degradation

Biophysical journal, 2013-04, Vol.104 (8), p.1783-1793

2013

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Cellular Compartments Cause Multistability and Allow Cells to Process More Information

Biophysical journal, 2013-04, Vol.104 (8), p.1824-1831

2013

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Parameter-free model discrimination criterion based on steady-state coplanarity

Proceedings of the National Academy of Sciences - PNAS, 2012-09, Vol.109 (39), p.15746-15751

2012

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A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

Nature protocols, 2014-02, Vol.9 (2), p.439-456

2014

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A large fraction of HLA class I ligands are proteasome-generated spliced peptides

Science (American Association for the Advancement of Science), 2016-10, Vol.354 (6310), p.354-358

2016

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Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures

Cell systems, 2017-09, Vol.5 (3), p.251-267.e3

2017

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Complex networks and simple models in biology

Journal of the Royal Society interface, 2005-12, Vol.2 (5), p.419

2005

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Evidence for an apartheid-like social structure in early Anglo-Saxon England

Proceedings of the Royal Society. B, Biological sciences, 2006-10, Vol.273 (1601), p.2651-2657

2006

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Maximizing the information content of experiments in systems biology

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002888-e1002888

2013

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Estimating the size of the human interactome

Proceedings of the National Academy of Sciences - PNAS, 2008-05, Vol.105 (19), p.6959-6964

2008

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Systems Analysis of the Dynamic Inflammatory Response to Tissue Damage Reveals Spatiotemporal Properties of the Wound Attractant Gradient

Current biology, 2016-08, Vol.26 (15), p.1975-1989

2016

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Sensitivity, robustness, and identifiability in stochastic chemical kinetics models

Proceedings of the National Academy of Sciences - PNAS, 2011-05, Vol.108 (21), p.8645-8650

2011

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Accurate Reconstruction of Cell and Particle Tracks from 3D Live Imaging Data

Cell systems, 2016-07, Vol.3 (1), p.102-107

2016

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Proteolytic dynamics of human 20S thymoproteasome

The Journal of biological chemistry, 2019-05, Vol.294 (19), p.7740-7754

2019

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Model selection in systems biology depends on experimental design

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003650-e1003650

2014

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Gene Regulatory Networks from Single Cell Data for Exploring Cell Fate Decisions

Methods in molecular biology (Clifton, N.J.), 2019, Vol.1975, p.211

2019

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On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo

Statistical applications in genetics and molecular biology, 2013-03, Vol.12 (1), p.87-107

2013

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Non-equilibrium statistical physics, transitory epigenetic landscapes, and cell fate decision dynamics

Mathematical biosciences and engineering : MBE, 2020-01, Vol.17 (6), p.7916-7930

2020

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Binomial subsampling

Proceedings of the Royal Society. A, Mathematical, physical, and engineering sciences, 2006-04, Vol.462 (2068), p.1181-1195

2006

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Balancing Selection at the Prion Protein Gene Consistent with Prehistoric Kurulike Epidemics

Science (American Association for the Advancement of Science), 2003-04, Vol.300 (5619), p.640-643

2003

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Gene Expression Profiles of Blumeria graminis Indicate Dynamic Changes to Primary Metabolism during Development of an Obligate Biotrophic Pathogen

The Plant cell, 2005-07, Vol.17 (7), p.2107-2122

2005

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Induction and Function of the Phage Shock Protein Extracytoplasmic Stress Response in Escherichia coli

The Journal of biological chemistry, 2006-07, Vol.281 (30), p.21147-21161

2006

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Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling

Decomposing Noise in Biochemical Signaling Systems Highlights the Role of Protein Degradation

Cellular Compartments Cause Multistability and Allow Cells to Process More Information

Parameter-free model discrimination criterion based on steady-state coplanarity

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

A large fraction of HLA class I ligands are proteasome-generated spliced peptides

Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures

Complex networks and simple models in biology

Evidence for an apartheid-like social structure in early Anglo-Saxon England

Maximizing the information content of experiments in systems biology

Estimating the size of the human interactome

Systems Analysis of the Dynamic Inflammatory Response to Tissue Damage Reveals Spatiotemporal Properties of the Wound Attractant Gradient

Sensitivity, robustness, and identifiability in stochastic chemical kinetics models

Accurate Reconstruction of Cell and Particle Tracks from 3D Live Imaging Data

Proteolytic dynamics of human 20S thymoproteasome

Model selection in systems biology depends on experimental design

Gene Regulatory Networks from Single Cell Data for Exploring Cell Fate Decisions

On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo

A Comprehensive Evaluation of Nasal and Bronchial Cytokines and Chemokines Following Experimental Rhinovirus Infection in Allergic Asthma: Increased Interferons (IFN-γ and IFN-λ) and Type 2 Inflammation (IL-5 and IL-13)

Non-equilibrium statistical physics, transitory epigenetic landscapes, and cell fate decision dynamics

Binomial subsampling

Balancing Selection at the Prion Protein Gene Consistent with Prehistoric Kurulike Epidemics

Gene Expression Profiles of Blumeria graminis Indicate Dynamic Changes to Primary Metabolism during Development of an Obligate Biotrophic Pathogen

Induction and Function of the Phage Shock Protein Extracytoplasmic Stress Response in Escherichia coli

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