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Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl

Nature (London), 2017-04, Vol.544 (7651), p.503-507

2017

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Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins

The EMBO journal, 2017-12, Vol.36 (24), p.3573-3599

2017

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Transcription shapes 3D chromatin organization by interacting with loop extrusion

Proceedings of the National Academy of Sciences - PNAS, 2023-03, Vol.120 (11), p.e2210480120

2023

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HiCognition: a visual exploration and hypothesis testing tool for 3D genomics

Genome Biology, 2023-07, Vol.24 (1), p.158-158, Article 158

2023

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Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei

Genome research, 2023-12, Vol.33 (12), p.2094-2107

2023

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Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing

Science (American Association for the Advancement of Science), 2012-12, Vol.338 (6113), p.1469-1472

2012

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Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms

Molecular cell, 2023-09, Vol.83 (17), p.3049-3063.e6

2023

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Absolute quantification of cohesin, CTCF and their regulators in human cells

eLife, 2019-06, Vol.8

2019

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Dynamics of sister chromatid resolution during cell cycle progression

The Journal of cell biology, 2018-06, Vol.217 (6), p.1985-2004

2018

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H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress

Genome research, 2014-11, Vol.24 (11), p.1808-1820

2014

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SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs

The EMBO journal, 2014-11, Vol.33 (22), p.2643-2658

2014

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Accurate and efficient reconstruction of deep phylogenies from structured RNAs

Nucleic acids research, 2009-10, Vol.37 (18), p.6184-6193

2009

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Wapl releases Scc1-cohesin and regulates chromosome structure and segregation in mouse oocytes

The Journal of cell biology, 2020-04, Vol.219 (4), p.1

2020

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Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

BMC evolutionary biology, 2009-05, Vol.9 (1), p.119

2009

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The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods

Molecular biology and evolution, 2010-11, Vol.27 (11), p.2507-2521

2010

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Nucleome programming is required for the foundation of totipotency in mammalian germline development

The EMBO journal, 2022-07, Vol.41 (13), p.e110600-n/a

2022

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Multiple sequence alignments of partially coding nucleic acid sequences

BMC bioinformatics, 2005-06, Vol.6 (1), p.160-160, Article 160

2005

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Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation

Molecular phylogenetics and evolution, 2009-12, Vol.53 (3), p.758-771

2009

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Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers

Cell reports (Cambridge), 2020-07, Vol.32 (3), p.107929-107929, Article 107929

2020

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MCM complexes are barriers that restrict cohesin-mediated loop extrusion

Nature (London), 2022-06, Vol.606 (7912), p.197-203

2022

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RNAP as a Moving Barrier to Loop Extrusion

Biophysical journal, 2019-02, Vol.116 (3), p.22

2019

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Airn Transcriptional Overlap, But Not Its IncRNA Products, Induces Imprinted Igf2r Silencing

Science (American Association for the Advancement of Science), 2012, Vol.338 (6113), p.1469-1472

2012

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Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins

Transcription shapes 3D chromatin organization by interacting with loop extrusion

HiCognition: a visual exploration and hypothesis testing tool for 3D genomics

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei

Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing

Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms

Absolute quantification of cohesin, CTCF and their regulators in human cells

Dynamics of sister chromatid resolution during cell cycle progression

H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress

SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs

Accurate and efficient reconstruction of deep phylogenies from structured RNAs

Wapl releases Scc1-cohesin and regulates chromosome structure and segregation in mouse oocytes

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods

Nucleome programming is required for the foundation of totipotency in mammalian germline development

Multiple sequence alignments of partially coding nucleic acid sequences

Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation

Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers

MCM complexes are barriers that restrict cohesin-mediated loop extrusion

RNAP as a Moving Barrier to Loop Extrusion

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesin.sup.STAG1 from WAPL

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesin STAG1 from WAPL

Airn Transcriptional Overlap, But Not Its IncRNA Products, Induces Imprinted Igf2r Silencing

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