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Introduction to the Fast Multipole Method: Topics in Computational Biophysics, Theory, and Implementation

1, 2020

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Introduction to quantum biology

2019

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PEER-NGL project: Open source global database and model development for the next-generation of liquefaction assessment procedures

Soil dynamics and earthquake engineering (1984), 2016-12, Vol.91, p.317-328

2016

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(17) Evaluation of an automated method to measure small dense ldl cholesterol

Atherosclerosis, 2012-08, Vol.223 (2), p.532-532

2012

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Murine gammaherpes virus as a cofactor in the development of pulmonary fibrosis in bleomycin resistant mice

The European respiratory journal, 2002-11, Vol.20 (5), p.1228-1232

2002

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Apolipoprotein B metabolism and the distribution of VLDL and LDL subfractions

Journal of lipid research, 2000-02, Vol.41 (2), p.305-317

2000

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Pulmonary vasculitis in COVID-19: findings in the mouse model and comparison to other respiratory viral infections

Journal of comparative pathology, 2023-05, Vol.203, p.48-49

2023

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Bovine gammaherpesvirus 6 tropism in its natural host

Journal of comparative pathology, 2023-05, Vol.203, p.66-66

2023

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Bactericidal/Permeability-increasing Fold-containing Family Member A1 (BPIFA1) Plays a Role in the Pathogenesis and Immune Response of Mice to Influenza a Virus

Journal of comparative pathology, 2020-01, Vol.174, p.194-194

2020

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Optimization of parameters for semiempirical methods VI: more modifications to the NDDO approximations and re-optimization of parameters

Journal of molecular modeling, 2013-01, Vol.19 (1), p.1-32

Stewart, James J. P.

2013

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Vascular changes in association with non-suppurative encephalitis in SARS-CoV-2-infected K18-hACE2 mice

Journal of comparative pathology, 2024-04, Vol.210, p.59-59

2024

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Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements

Journal of molecular modeling, 2007-12, Vol.13 (12), p.1173-1213

Stewart, James J P

2007

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New Insights into the Pathogenesis of Vasculitis in Malignant Catarrhal Fever

Journal of comparative pathology, 2018-01, Vol.158, p.98-98

2018

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Distribution of Ovine Herpesvirus-2 Transcript and Protein in Naturally Infected Sheep

Journal of comparative pathology, 2016-01, Vol.154 (1), p.119-119

2016

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Gammaherpesvirus Infections in Cattle in Europe: Investigations on the Prevalence and Relevance of Bovine Herpesvirus-6

Journal of comparative pathology, 2022-02, Vol.191, p.40-40

2022

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Application of the PM6 method to modeling proteins

Journal of molecular modeling, 2009-07, Vol.15 (7), p.765-805

Stewart, James J. P.

2009

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How well do semiempirical QM methods describe the structure of proteins?

The Journal of chemical physics, 2023-01, Vol.158 (4), p.044118-044118

2023

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AutoMeKin2021: An open‐source program for automated reaction discovery

Journal of computational chemistry, 2021-10, Vol.42 (28), p.2036-2048

2021

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A semiempirical method optimized for modeling proteins

Journal of molecular modeling, 2023-09, Vol.29 (9), p.284-284, Article 284

2023

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RM1: A reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and I

Journal of computational chemistry, 2006-07, Vol.27 (10), p.1101-1111

2006

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An investigation into the applicability of the semiempirical method PM7 for modeling the catalytic mechanism in the enzyme chymotrypsin

Journal of molecular modeling, 2017-05, Vol.23 (5), p.154-27, Article 154

Stewart, James J. P.

2017

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An examination of the nature of localized molecular orbitals and their value in understanding various phenomena that occur in organic chemistry

Journal of molecular modeling, 2019-01, Vol.25 (1), p.7-17, Article 7

Stewart, James J. P.

2019

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Application of the PM6 method to modeling the solid state

Journal of molecular modeling, 2008-06, Vol.14 (6), p.499-535

Stewart, James J. P.

2008

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Erratum: An innate defense peptide BPIFA1/SPLUNC1 restricts influenza A virus infection

Mucosal immunology, 2018-05, Vol.11 (3), p.1008-1008

2018

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Sparkle/PM7 Lanthanide Parameters for the Modeling of Complexes and Materials

Journal of chemical theory and computation, 2013-08, Vol.9 (8), p.3333-3341

2013

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Introduction to the Fast Multipole Method: Topics in Computational Biophysics, Theory, and Implementation

Introduction to quantum biology

PEER-NGL project: Open source global database and model development for the next-generation of liquefaction assessment procedures

(17) Evaluation of an automated method to measure small dense ldl cholesterol

Murine gammaherpes virus as a cofactor in the development of pulmonary fibrosis in bleomycin resistant mice

Apolipoprotein B metabolism and the distribution of VLDL and LDL subfractions

Pulmonary vasculitis in COVID-19: findings in the mouse model and comparison to other respiratory viral infections

Bovine gammaherpesvirus 6 tropism in its natural host

Bactericidal/Permeability-increasing Fold-containing Family Member A1 (BPIFA1) Plays a Role in the Pathogenesis and Immune Response of Mice to Influenza a Virus

Optimization of parameters for semiempirical methods VI: more modifications to the NDDO approximations and re-optimization of parameters

Vascular changes in association with non-suppurative encephalitis in SARS-CoV-2-infected K18-hACE2 mice

Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements

New Insights into the Pathogenesis of Vasculitis in Malignant Catarrhal Fever

Distribution of Ovine Herpesvirus-2 Transcript and Protein in Naturally Infected Sheep

Gammaherpesvirus Infections in Cattle in Europe: Investigations on the Prevalence and Relevance of Bovine Herpesvirus-6

Application of the PM6 method to modeling proteins

How well do semiempirical QM methods describe the structure of proteins?

AutoMeKin2021: An open‐source program for automated reaction discovery

A semiempirical method optimized for modeling proteins

RM1: A reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and I

An investigation into the applicability of the semiempirical method PM7 for modeling the catalytic mechanism in the enzyme chymotrypsin

An examination of the nature of localized molecular orbitals and their value in understanding various phenomena that occur in organic chemistry

Application of the PM6 method to modeling the solid state

Erratum: An innate defense peptide BPIFA1/SPLUNC1 restricts influenza A virus infection

Sparkle/PM7 Lanthanide Parameters for the Modeling of Complexes and Materials

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