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The Phyre2 web portal for protein modeling, prediction and analysis

Nature protocols, 2015-06, Vol.10 (6), p.845-858

2015

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Missense3D-DB web catalogue: an atom-based analysis and repository of 4M human protein-coding genetic variants

Human genetics, 2021-05, Vol.140 (5), p.805-812

2021

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Protein structure prediction on the Web: a case study using the Phyre server

Nature protocols, 2009-02, Vol.4 (3), p.363-371

2009

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ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

The Plant cell, 2017-08, Vol.29 (8), p.1806-1821

2017

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3DLigandSite: predicting ligand-binding sites using similar structures

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W469-W473

2010

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AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis

BMC bioinformatics, 2015-10, Vol.16 (1), p.335-335, Article 335

2015

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ConFunc—functional annotation in the twilight zone

Bioinformatics, 2008-03, Vol.24 (6), p.798-806

2008

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Thienopyrimidinone Based Sirtuin‑2 (SIRT2)-Selective Inhibitors Bind in the Ligand Induced Selectivity Pocket

Journal of medicinal chemistry, 2017-03, Vol.60 (5), p.1928-1945

2017

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PINALOG: a novel approach to align protein interaction networks—implications for complex detection and function prediction

Bioinformatics (Oxford, England), 2012-05, Vol.28 (9), p.1239-1245

2012

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Protein-protein interaction sites are hot spots for disease-associated nonsynonymous SNPs

Human mutation, 2012-02, Vol.33 (2), p.359-363

2012

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The AlphaFold Database of Protein Structures: A Biologist’s Guide

Journal of molecular biology, 2022-01, Vol.434 (2), p.167336-167336, Article 167336

2022

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Genetic variation in SCN10A influences cardiac conduction

Nature genetics, 2010-02, Vol.42 (2), p.149-152

2010

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Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking

Proceedings of the National Academy of Sciences - PNAS, 2008-07, Vol.105 (30), p.10390-10395

2008

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Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels

Nature genetics, 2009-11, Vol.41 (11), p.1170-1172

2009

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Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?

Journal of molecular biology, 2019-05, Vol.431 (11), p.2197-2212

2019

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Structure-based prediction of protein allostery

Current opinion in structural biology, 2018-06, Vol.50, p.1-8

2018

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Landscape of Pleiotropic Proteins Causing Human Disease: Structural and System Biology Insights

Human mutation, 2017-03, Vol.38 (3), p.289-296

2017

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Functional significance of mutations in the Snf2 domain of ATRX

Human molecular genetics, 2011-07, Vol.20 (13), p.2603-2610

2011

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Properties of human genes guided by their enrichment in rare and common variants

Human mutation, 2018-03, Vol.39 (3), p.365-370

2018

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CombFunc: predicting protein function using heterogeneous data sources

Nucleic acids research, 2012-07, Vol.40 (Web Server issue), p.W466-W470

2012

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Challenges for the prediction of macromolecular interactions

Current opinion in structural biology, 2011-06, Vol.21 (3), p.382-390

2011

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Polyproline-II Helix in Proteins: Structure and Function

Journal of molecular biology, 2013-06, Vol.425 (12), p.2100-2132

2013

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The Effects of Non-Synonymous Single Nucleotide Polymorphisms (nsSNPs) on Protein–Protein Interactions

Journal of molecular biology, 2013-11, Vol.425 (21), p.3949-3963

2013

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EzMol: A Web Server Wizard for the Rapid Visualization and Image Production of Protein and Nucleic Acid Structures

Journal of molecular biology, 2018-07, Vol.430 (15), p.2244-2248

2018

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CAPRI: A Critical Assessment of PRedicted Interactions

Proteins, structure, function, and bioinformatics, 2003-07, Vol.52 (1), p.2-9

2003

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The Phyre2 web portal for protein modeling, prediction and analysis

Missense3D-DB web catalogue: an atom-based analysis and repository of 4M human protein-coding genetic variants

Protein structure prediction on the Web: a case study using the Phyre server

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

3DLigandSite: predicting ligand-binding sites using similar structures

AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis

ConFunc—functional annotation in the twilight zone

Thienopyrimidinone Based Sirtuin‑2 (SIRT2)-Selective Inhibitors Bind in the Ligand Induced Selectivity Pocket

PINALOG: a novel approach to align protein interaction networks—implications for complex detection and function prediction

Protein-protein interaction sites are hot spots for disease-associated nonsynonymous SNPs

The AlphaFold Database of Protein Structures: A Biologist’s Guide

Genetic variation in SCN10A influences cardiac conduction

Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking

Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels

Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?

Structure-based prediction of protein allostery

Landscape of Pleiotropic Proteins Causing Human Disease: Structural and System Biology Insights

Functional significance of mutations in the Snf2 domain of ATRX

Properties of human genes guided by their enrichment in rare and common variants

CombFunc: predicting protein function using heterogeneous data sources

Challenges for the prediction of macromolecular interactions

Polyproline-II Helix in Proteins: Structure and Function

The Effects of Non-Synonymous Single Nucleotide Polymorphisms (nsSNPs) on Protein–Protein Interactions

EzMol: A Web Server Wizard for the Rapid Visualization and Image Production of Protein and Nucleic Acid Structures

CAPRI: A Critical Assessment of PRedicted Interactions

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