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Voting-based integration algorithm improves causal network learning from interventional and observational data: An application to cell signaling network inference

PloS one, 2021-02, Vol.16 (2), p.e0245776-e0245776

2021

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Predicting chemotherapy response using a variational autoencoder approach

BMC bioinformatics, 2021-09, Vol.22 (1), p.1-453, Article 453

2021

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Cholesterol loading reprograms the microRNA-143/145-myocardin axis to convert aortic smooth muscle cells to a dysfunctional macrophage-like phenotype

Arteriosclerosis, thrombosis, and vascular biology, 2015-03, Vol.35 (3), p.535-546

2015

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Differential gene regulatory networks in development and disease

Cellular and molecular life sciences : CMLS, 2018-03, Vol.75 (6), p.1013-1025

2018

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Enhanced Sensitivity of Lateral Flow Tests Using a Two-Dimensional Paper Network Format

Analytical chemistry (Washington), 2011-10, Vol.83 (20), p.7941-7946

2011

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Transport in two-dimensional paper networks

Microfluidics and nanofluidics, 2011-01, Vol.10 (1), p.29-35

2011

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Investigation of Reagent Delivery Formats in a Multivalent Malaria Sandwich Immunoassay and Implications for Assay Performance

Analytical chemistry (Washington), 2016-02, Vol.88 (4), p.2311-2320

2016

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Reduction pathways identification of agricultural water pollution in Hubei Province, China

Ecological indicators, 2023-09, Vol.153, p.110464, Article 110464

2023

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A Method for Cross-Species Visualization and Analysis of RNA-Sequence Data

Methods in molecular biology (Clifton, N.J.), 2018-01, Vol.1702, p.291

Ramsey, Stephen A

2018

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A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites

Bioinformatics, 2015-11, Vol.31 (21), p.3445-3450

2015

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Spatio-temporal analysis of water sustainability of cities in the Yangtze River Economic Belt based on the perspectives of quantity-quality-benefit

Ecological indicators, 2024-03, Vol.160, p.111909, Article 111909

2024

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Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression

JCI insight, 2019-02, Vol.4 (4)

2019

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RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine

BMC bioinformatics, 2022-09, Vol.23 (1), p.400-33, Article 400

2022

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ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol-induced lipid body formation

The Journal of experimental medicine, 2012-04, Vol.209 (4), p.807-817

2012

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Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics

PLoS computational biology, 2008-03, Vol.4 (3), p.e1000021-e1000021

2008

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CERENKOV2: improved detection of functional noncoding SNPs using data-space geometric features

BMC bioinformatics, 2019-02, Vol.20 (1), p.63-63, Article 63

2019

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Predicting Time-to-Healing from a Digital Wound Image: A Hybrid Neural Network and Decision Tree Approach Improves Performance

Computation, 2024-02, Vol.12 (3), p.42

2024

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Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway

PLoS genetics, 2014-12, Vol.10 (12), p.e1004828

2014

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Combining eQTL and SNP Annotation Data to Identify Functional Noncoding SNPs in GWAS Trait-Associated Regions

Methods in molecular biology (Clifton, N.J.), 2020, Vol.2082, p.73

2020

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Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals

Nature immunology, 2009-04, Vol.10 (4), p.437-443

2009

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Vitamin E Deficiency Disrupts Gene Expression Networks during Zebrafish Development

Nutrients, 2021-01, Vol.13 (2), p.468

2021

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ATF3, an adaptive-response gene, enhances TGFβ signaling and cancer-initiating cell features in breast cancer cells

Journal of cell science, 2010-10, Vol.123 (20), p.3558-3565

2010

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Genomic Analysis of MSM Rectal Chlamydia trachomatis Isolates Identifies Predicted Tissue-Tropic Lineages Generated by Intraspecies Lateral Gene Transfer-Mediated Evolution

Infection and immunity, 2022-11, Vol.90 (11), p.e0026522-e0026522

2022

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Gene expression dynamics in the macrophage exhibit criticality

Proceedings of the National Academy of Sciences - PNAS, 2008-02, Vol.105 (6), p.1897-1900

2008

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Voting-based integration algorithm improves causal network learning from interventional and observational data: An application to cell signaling network inference

Predicting chemotherapy response using a variational autoencoder approach

Cholesterol loading reprograms the microRNA-143/145-myocardin axis to convert aortic smooth muscle cells to a dysfunctional macrophage-like phenotype

Differential gene regulatory networks in development and disease

Enhanced Sensitivity of Lateral Flow Tests Using a Two-Dimensional Paper Network Format

Transport in two-dimensional paper networks

Investigation of Reagent Delivery Formats in a Multivalent Malaria Sandwich Immunoassay and Implications for Assay Performance

Reduction pathways identification of agricultural water pollution in Hubei Province, China

A Method for Cross-Species Visualization and Analysis of RNA-Sequence Data

A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites

Spatio-temporal analysis of water sustainability of cities in the Yangtze River Economic Belt based on the perspectives of quantity-quality-benefit

Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression

RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine

ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol-induced lipid body formation

Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics

CERENKOV2: improved detection of functional noncoding SNPs using data-space geometric features

Predicting Time-to-Healing from a Digital Wound Image: A Hybrid Neural Network and Decision Tree Approach Improves Performance

Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway

Combining eQTL and SNP Annotation Data to Identify Functional Noncoding SNPs in GWAS Trait-Associated Regions

Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals

Vitamin E Deficiency Disrupts Gene Expression Networks during Zebrafish Development

ATF3, an adaptive-response gene, enhances TGFβ signaling and cancer-initiating cell features in breast cancer cells

Genomic Analysis of MSM Rectal Chlamydia trachomatis Isolates Identifies Predicted Tissue-Tropic Lineages Generated by Intraspecies Lateral Gene Transfer-Mediated Evolution

Wnt signaling enhances macrophage responses to IL-4 and promotes resolution of atherosclerosis

Gene expression dynamics in the macrophage exhibit criticality

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