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Assumptions on decision making and environment can yield multiple steady states in microbial community models

BMC bioinformatics, 2023-06, Vol.24 (Suppl 1), p.262-262, Article 262

2023

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Functional comparison of metabolic networks across species

Nature communications, 2023-03, Vol.14 (1), p.1699-1699, Article 1699

2023

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A rationally engineered decoder of transient intracellular signals

Nature communications, 2021-03, Vol.12 (1), p.1886-1886, Article 1886

2021

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Controlling cell-to-cell variability with synthetic gene circuits

Biochemical Society transactions, 2019-12, Vol.47 (6), p.1795-1804

2019

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Bridging intracellular scales by mechanistic computational models

Current opinion in biotechnology, 2018-08, Vol.52, p.17-24

2018

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Efficient design of synthetic gene circuits under cell-to-cell variability

BMC bioinformatics, 2023-12, Vol.24 (Suppl 1), p.460-460, Article 460

2023

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β-cell-mimetic designer cells provide closed-loop glycemic control

Science (American Association for the Advancement of Science), 2016-12, Vol.354 (6317), p.1296-1301

2016

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A tunable synthetic mammalian oscillator

Nature, 2009-01, Vol.457 (7227), p.309-312

2009

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Self-sufficient control of urate homeostasis in mice by a synthetic circuit

Nature biotechnology, 2010-04, Vol.28 (4), p.355-360

2010

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Inflammatory signals directly instruct PU.1 in HSCs via TNF

Blood, 2019-02, Vol.133 (8), p.816-819

2019

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Cell region fingerprints enable highly precise single-cell tracking and lineage reconstruction

Nature methods, 2022-10, Vol.19 (10), p.1276

2022

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Model-based inference of neutralizing antibody avidities against influenza virus

PLoS pathogens, 2022-01, Vol.18 (1), p.e1010243-e1010243

2022

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Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis

Molecular systems biology, 2013, Vol.9 (1), p.709-n/a

2013

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Synthetic two-way communication between mammalian cells

Nature biotechnology, 2012-10, Vol.30 (10), p.991-996

2012

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Hypergraphs and cellular networks

PLoS computational biology, 2009-05, Vol.5 (5), p.e1000385-e1000385

2009

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A quantitative model for virus uncoating predicts influenza A infectivity

Cell reports (Cambridge), 2023-12, Vol.42 (12), p.113558-113558, Article 113558

2023

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Subnetwork analysis reveals dynamic features of complex (bio)chemical networks

Proceedings of the National Academy of Sciences - PNAS, 2007-12, Vol.104 (49), p.19175-19180

2007

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Automatic design of digital synthetic gene circuits

PLoS computational biology, 2011-02, Vol.7 (2), p.e1001083-e1001083

2011

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Metabolic network structure determines key aspects of functionality and regulation

Nature (London), 2002-11, Vol.420 (6912), p.190-193

2002

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Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis

Proceedings of the National Academy of Sciences - PNAS, 2020-04, Vol.117 (15), p.8494-8502

2020

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Efficient Characterization of Parametric Uncertainty of Complex (Bio)chemical Networks

PLoS computational biology, 2015-08, Vol.11 (8), p.e1004457-e1004457

2015

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Ensemble modeling for analysis of cell signaling dynamics

Nature biotechnology, 2007-09, Vol.25 (9), p.1001-1006

2007

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Integrating -omics data into genome-scale metabolic network models: principles and challenges

Essays in biochemistry, 2018-10, Vol.62 (4), p.563

2018

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Automated Planning Enables Complex Protocols on Liquid-Handling Robots

ACS synthetic biology, 2018-03, Vol.7 (3), p.922-932

2018

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System-level insights into yeast metabolism by thermodynamic analysis of elementary flux modes

PLoS computational biology, 2012-03, Vol.8 (3), p.e1002415-e1002415

2012

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Assumptions on decision making and environment can yield multiple steady states in microbial community models

Functional comparison of metabolic networks across species

A rationally engineered decoder of transient intracellular signals

Controlling cell-to-cell variability with synthetic gene circuits

Bridging intracellular scales by mechanistic computational models

Efficient design of synthetic gene circuits under cell-to-cell variability

β-cell-mimetic designer cells provide closed-loop glycemic control

A tunable synthetic mammalian oscillator

Self-sufficient control of urate homeostasis in mice by a synthetic circuit

Inflammatory signals directly instruct PU.1 in HSCs via TNF

Cell region fingerprints enable highly precise single-cell tracking and lineage reconstruction

Model-based inference of neutralizing antibody avidities against influenza virus

Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis

Synthetic two-way communication between mammalian cells

Hypergraphs and cellular networks

A quantitative model for virus uncoating predicts influenza A infectivity

Subnetwork analysis reveals dynamic features of complex (bio)chemical networks

Automatic design of digital synthetic gene circuits

Metabolic network structure determines key aspects of functionality and regulation

Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis

Efficient Characterization of Parametric Uncertainty of Complex (Bio)chemical Networks

Ensemble modeling for analysis of cell signaling dynamics

Integrating -omics data into genome-scale metabolic network models: principles and challenges

Automated Planning Enables Complex Protocols on Liquid-Handling Robots

System-level insights into yeast metabolism by thermodynamic analysis of elementary flux modes

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