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omeSOM: a software for clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants

BMC bioinformatics, 2010-08, Vol.11 (1), p.438-438, Article 438

2010

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Transfer learning in proteins: evaluating novel protein learned representations for bioinformatics tasks

Briefings in bioinformatics, 2022-07, Vol.23 (4)

2022

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Deep Neural Architectures for Highly Imbalanced Data in Bioinformatics

IEEE transaction on neural networks and learning systems, 2020-08, Vol.31 (8), p.2857-2867

2020

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Complexity measures of the mature miRNA for improving pre-miRNAs prediction

Bioinformatics, 2020-04, Vol.36 (8), p.2319-2327

2020

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A Neural Network Model for Estimating the Particle Size Distribution of Dilute Latex from Multiangle Dynamic Light Scattering Measurements

Particle & particle systems characterization, 2009-04, Vol.26 (1-2), p.41-52

2009

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miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs

Bioinformatics (Oxford, England), 2022-02, Vol.38 (5), p.1191-1197

2022

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evolSOM: An R package for analyzing conservation and displacement of biological variables with self-organizing maps

Bioinformatics advances, 2024, Vol.4 (1), p.vbae124

2024

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gGN: Representing the Gene Ontology as low-rank Gaussian distributions

Computers in biology and medicine, 2024-12, Vol.183, p.109234, Article 109234

2024

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Anc2vec: embedding gene ontology terms by preserving ancestors relationships

Briefings in bioinformatics, 2022-03, Vol.23 (2)

2022

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Hierarchical deep learning for predicting GO annotations by integrating protein knowledge

Bioinformatics (Oxford, England), 2022-09, Vol.38 (19), p.4488-4496

2022

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Evaluating large language models for annotating proteins

Briefings in bioinformatics, 2024-03, Vol.25 (3)

2024

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Diversity control for improving the analysis of consensus clustering

Information sciences, 2016-09, Vol.361-362, p.120-134

2016

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Automatic recognition of quarantine citrus diseases

Expert systems with applications, 2013-07, Vol.40 (9), p.3512-3517

2013

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Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning

Briefings in bioinformatics, 2021-05, Vol.22 (3)

2021

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Novel SARS-CoV-2 encoded small RNAs in the passage to humans

Bioinformatics, 2021-04, Vol.36 (24), p.5571-5581

2021

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Correction: Alternative use of miRNA-biogenesis co-factors in plants at low temperatures

Development (Cambridge), 2024-07, Vol.151 (13)

2024

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High Class-Imbalance in pre-miRNA Prediction: A Novel Approach Based on deepSOM

IEEE/ACM transactions on computational biology and bioinformatics, 2017-11, Vol.14 (6), p.1316-1326

2017

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exp2GO: Improving Prediction of Functions in the Gene Ontology With Expression Data

IEEE/ACM transactions on computational biology and bioinformatics, 2023-03, Vol.20 (2), p.999-1008

2023

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Alternative use of miRNA-biogenesis co-factors in plants at low temperatures

Development (Cambridge), 2019-03, Vol.146 (5)

2019

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Predicting novel microRNA: a comprehensive comparison of machine learning approaches

Briefings in bioinformatics, 2019-09, Vol.20 (5), p.1607-1620

2019

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A very simple and fast way to access and validate algorithms in reproducible research

Briefings in bioinformatics, 2016-01, Vol.17 (1), p.180-183

2016

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sincFold: end-to-end learning of short- and long-range interactions in RNA secondary structure

Briefings in bioinformatics, 2024-06, Vol.25 (4)

2024

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A very simple and fast way to access and validate algorithms in rA very simple and fast way to access and validate algorithms in reproducible research reproducible research

Briefings in bioinformatics, 2016-01, Vol.17 (1), p.180

2016

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Metabolic pathways synthesis based on ant colony optimization

Scientific reports, 2018-11, Vol.8 (1), p.16398-11, Article 16398

2018

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Whole genome analysis of codon usage in Echinococcus

Molecular and biochemical parasitology, 2018-10, Vol.225, p.54-66

2018

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omeSOM: a software for clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants

Transfer learning in proteins: evaluating novel protein learned representations for bioinformatics tasks

Deep Neural Architectures for Highly Imbalanced Data in Bioinformatics

Complexity measures of the mature miRNA for improving pre-miRNAs prediction

A Neural Network Model for Estimating the Particle Size Distribution of Dilute Latex from Multiangle Dynamic Light Scattering Measurements

miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs

evolSOM: An R package for analyzing conservation and displacement of biological variables with self-organizing maps

gGN: Representing the Gene Ontology as low-rank Gaussian distributions

Anc2vec: embedding gene ontology terms by preserving ancestors relationships

Hierarchical deep learning for predicting GO annotations by integrating protein knowledge

Evaluating large language models for annotating proteins

Diversity control for improving the analysis of consensus clustering

Automatic recognition of quarantine citrus diseases

Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning

Novel SARS-CoV-2 encoded small RNAs in the passage to humans

Correction: Alternative use of miRNA-biogenesis co-factors in plants at low temperatures

High Class-Imbalance in pre-miRNA Prediction: A Novel Approach Based on deepSOM

exp2GO: Improving Prediction of Functions in the Gene Ontology With Expression Data

Alternative use of miRNA-biogenesis co-factors in plants at low temperatures

Predicting novel microRNA: a comprehensive comparison of machine learning approaches

A very simple and fast way to access and validate algorithms in reproducible research

sincFold: end-to-end learning of short- and long-range interactions in RNA secondary structure

A very simple and fast way to access and validate algorithms in rA very simple and fast way to access and validate algorithms in reproducible research reproducible research

Metabolic pathways synthesis based on ant colony optimization

Whole genome analysis of codon usage in Echinococcus

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