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Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust

Development (Cambridge), 2018-06, Vol.145 (12), p.dev165753-dev165753

2018

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Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions

Scientific reports, 2020-02, Vol.10 (1), p.2046-2046, Article 2046

2020

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LiveCellMiner: A new tool to analyze mitotic progression

PloS one, 2022-07, Vol.17 (7), p.e0270923-e0270923

2022

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3D fluorescence microscopy data synthesis for segmentation and benchmarking

PloS one, 2021-12, Vol.16 (12), p.e0260509

2021

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Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines

PloS one, 2017-11, Vol.12 (11), p.e0187535-e0187535

2017

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Automatic detection of cell-cycle stages using recurrent neural networks

PloS one, 2024-03, Vol.19 (3), p.e0297356-e0297356

2024

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Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

Developmental cell, 2016-01, Vol.36 (2), p.225-240

2016

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Ventral striatal islands of Calleja neurons control grooming in mice

Nature neuroscience, 2021-12, Vol.24 (12), p.1699-1710

2021

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Application of 3D MAPs pipeline identifies the morphological sequence chondrocytes undergo and the regulatory role of GDF5 in this process

Nature communications, 2021-09, Vol.12 (1), p.5363-5363, Article 5363

2021

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Correction: Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines

PloS one, 2018-03, Vol.13 (3), p.e0195394-e0195394

2018

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Multimodal Deep Learning for Integrating Chest Radiographs and Clinical Parameters: A Case for Transformers

Radiology, 2023-10, Vol.309 (1), p.e230806-e230806

2023

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Wnt/PCP controls spreading of Wnt/β-catenin signals by cytonemes in vertebrates

eLife, 2018-07, Vol.7

2018

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Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011890-e1011890

2024

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Denoising diffusion probabilistic models for 3D medical image generation

Scientific reports, 2023-05, Vol.13 (1), p.7303-12, Article 7303

2023

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Quantitative Characterization of Macrophage, Lymphocyte, and Neutrophil Subtypes Within the Foreign Body Granuloma of Human Mesh Explants by 5-Marker Multiplex Fluorescence Microscopy

Frontiers in medicine, 2022-02, Vol.9, p.777439-777439

2022

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Medical transformer for multimodal survival prediction in intensive care: integration of imaging and non-imaging data

Scientific reports, 2023-07, Vol.13 (1), p.10666-10666, Article 10666

2023

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Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks

PloS one, 2014-02, Vol.9 (2), p.e90036

2014

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Microfluidic Chips for Life Sciences—A Comparison of Low Entry Manufacturing Technologies

Small (Weinheim an der Bergstrasse, Germany), 2019-08, Vol.15 (35), p.e1901956-n/a

2019

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Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves

PLoS genetics, 2020-06, Vol.16 (6), p.e1008774-e1008774

2020

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The HMG box transcription factors Sox1a and Sox1b specify a new class of glycinergic interneuron in the spinal cord of zebrafish embryos

Development (Cambridge), 2019-02, Vol.146 (4)

2019

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Definition and Quantification of Three-Dimensional Imaging Targets to Phenotype Pre-Eclampsia Subtypes: An Exploratory Study

International journal of molecular sciences, 2023-02, Vol.24 (4), p.3240

2023

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Quantitative mapping of keratin networks in 3D

eLife, 2022-02, Vol.11

2022

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EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006128-e1006128

2018

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Publisher Correction: Ventral striatal islands of Calleja neurons control grooming in mice

Nature neuroscience, 2022-02, Vol.25 (2), p.264-264

2022

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Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust

Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions

LiveCellMiner: A new tool to analyze mitotic progression

3D fluorescence microscopy data synthesis for segmentation and benchmarking

Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines

Automatic detection of cell-cycle stages using recurrent neural networks

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

Ventral striatal islands of Calleja neurons control grooming in mice

Application of 3D MAPs pipeline identifies the morphological sequence chondrocytes undergo and the regulatory role of GDF5 in this process

Correction: Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines

Multimodal Deep Learning for Integrating Chest Radiographs and Clinical Parameters: A Case for Transformers

Wnt/PCP controls spreading of Wnt/β-catenin signals by cytonemes in vertebrates

Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets

Denoising diffusion probabilistic models for 3D medical image generation

Quantitative Characterization of Macrophage, Lymphocyte, and Neutrophil Subtypes Within the Foreign Body Granuloma of Human Mesh Explants by 5-Marker Multiplex Fluorescence Microscopy

Medical transformer for multimodal survival prediction in intensive care: integration of imaging and non-imaging data

Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks

Microfluidic Chips for Life Sciences—A Comparison of Low Entry Manufacturing Technologies

Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves

Using positional information to provide context for biological image analysis with MorphoGraphX 2.0

The HMG box transcription factors Sox1a and Sox1b specify a new class of glycinergic interneuron in the spinal cord of zebrafish embryos

Definition and Quantification of Three-Dimensional Imaging Targets to Phenotype Pre-Eclampsia Subtypes: An Exploratory Study

Quantitative mapping of keratin networks in 3D

EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos

Publisher Correction: Ventral striatal islands of Calleja neurons control grooming in mice

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