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Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

Nucleic acids research, 2001-07, Vol.29 (14), p.2994-3005

2001

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AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes

Genome research, 1999-01, Vol.9 (1), p.27-43

1999

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Finding functional sequence elements by multiple local alignment

Nucleic acids research, 2004-01, Vol.32 (1), p.189-200

2004

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Prediction of immunodominant helper T cell antigenic sites from the primary sequence

The Journal of immunology (1950), 1987-04, Vol.138 (7), p.2213-2229

1987

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Factors underlying spontaneous inactivation and susceptibility to neutralization of human immunodeficiency virus

Virology (New York, N.Y.), 1992-08, Vol.189 (2), p.695-714

1992

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Statistical Analysis of Sparse Infection Data and its Implications for Retroviral Treatment Trials in Primates

Proceedings of the National Academy of Sciences - PNAS, 1992-08, Vol.89 (16), p.7581-7585

Spoug, John L.

1992

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Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences

Nucleic acids research, 2002-07, Vol.30 (14), p.3214-3224

2002

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The efficient computation of position-specific match scores with the fast fourier transform

Journal of computational biology, 2002, Vol.9 (1), p.23-33

2002

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Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

Journal of molecular biology, 1987-06, Vol.195 (3), p.659-685

1987

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HIV requires multiple gp120 molecules for CD4-mediated infection

Nature (London), 1990-07, Vol.346 (6281), p.277-279

1990

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The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment

Nucleic acids research, 2005-01, Vol.33 (15), p.4987-4994

2005

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Alignments anchored on genomic landmarks can aid in the identification of regulatory elements

Bioinformatics, 2005-06, Vol.21 (suppl-1), p.i440-i448

2005

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Strong conformational propensities enhance T cell antigenicity

The Journal of immunology (1950), 1987-01, Vol.138 (1), p.204-212

1987

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Blocking of human immunodeficiency virus infection depends on cell density and viral stock age

Journal of Virology, 1991-06, Vol.65 (6), p.3293-3300

1991

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Quantifying the Infectivity of Human Immunodeficiency Virus

Proceedings of the National Academy of Sciences - PNAS, 1989-06, Vol.86 (12), p.4644-4648

1989

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HIV-1 infection kinetics in tissue cultures

Mathematical biosciences, 1996-11, Vol.138 (1), p.1-22

1996

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Viral multiplicity of attachment and its implications for human immunodeficiency virus therapies

Journal of Virology, 1994-03, Vol.68 (3), p.1782-1789

Spouge, J L

1994

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Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae

Genome research, 1999-08, Vol.9 (8), p.775-792

1999

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The correlation error and finite-size correction in an ungapped sequence alignment

Bioinformatics, 2002-09, Vol.18 (9), p.1236-1242

2002

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Human plasma enhances the infectivity of primary human immunodeficiency virus type 1 isolates in peripheral blood mononuclear cells and monocyte-derived macrophages

Journal of Virology, 1995-10, Vol.69 (10), p.6054-6062

1995

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Increase of Primary HIV-1 Production in Human Peripheral Blood Mononuclear Cells by Intermittent Medium Replenishment

Biotechnology progress, 1998-05, Vol.14 (3), p.540-542

1998

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Fast optimal alignment

Bioinformatics, 1991, Vol.7 (1), p.1-7

Spouge, J.L

1991

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Computation of the Gamma, Digamma, and Trigamma Functions

SIAM journal on numerical analysis, 1994-06, Vol.31 (3), p.931-944

Spouge, John L.

1994

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Speeding up dynamic programming algorithms for finding optimal lattice paths

SIAM journal on applied mathematics, 1989-10, Vol.49 (5), p.1552-1566

Spouge, J.L

1989

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Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes

Genetical Research, 2003-08, Vol.82 (1), p.1-18, Article S0016672303006268

2003

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Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes

Finding functional sequence elements by multiple local alignment

Prediction of immunodominant helper T cell antigenic sites from the primary sequence

Factors underlying spontaneous inactivation and susceptibility to neutralization of human immunodeficiency virus

Statistical Analysis of Sparse Infection Data and its Implications for Retroviral Treatment Trials in Primates

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences

The efficient computation of position-specific match scores with the fast fourier transform

Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

HIV requires multiple gp120 molecules for CD4-mediated infection

The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements

Strong conformational propensities enhance T cell antigenicity

Blocking of human immunodeficiency virus infection depends on cell density and viral stock age

Quantifying the Infectivity of Human Immunodeficiency Virus

HIV-1 infection kinetics in tissue cultures

Viral multiplicity of attachment and its implications for human immunodeficiency virus therapies

Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae

The correlation error and finite-size correction in an ungapped sequence alignment

Human plasma enhances the infectivity of primary human immunodeficiency virus type 1 isolates in peripheral blood mononuclear cells and monocyte-derived macrophages

Increase of Primary HIV-1 Production in Human Peripheral Blood Mononuclear Cells by Intermittent Medium Replenishment

Fast optimal alignment

Computation of the Gamma, Digamma, and Trigamma Functions

Speeding up dynamic programming algorithms for finding optimal lattice paths

Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes

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