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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer

Current opinion in microbiology, 2017-08, Vol.38, p.66-73

2017

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Bacteriophages benefit from generalized transduction

PLoS pathogens, 2019-07, Vol.15 (7), p.e1007888

2019

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Identification and characterization of thousands of bacteriophage satellites across bacteria

Nucleic acids research, 2023-04, Vol.51 (6), p.2759-2777

2023

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Ensemble approaches for regression: A survey

ACM computing surveys, 2012-11, Vol.45 (1), p.1-40

2012

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Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

PLoS genetics, 2020-06, Vol.16 (6), p.e1008866-e1008866

2020

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Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation

Scientific reports, 2019-02, Vol.9 (1), p.3149, Article 3149

2019

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Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation

The ISME Journal, 2020-12, Vol.14 (12), p.2980-2996

2020

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Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires

Nucleic acids research, 2021-03, Vol.49 (5), p.2655-2673

2021

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Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies

eLife, 2023-03, Vol.12

2023

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Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa

Molecular biology and evolution, 2021-05, Vol.38 (6), p.2497-2512

2021

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The genetic basis of Escherichia coli pathoadaptation to macrophages

PLoS pathogens, 2013-12, Vol.9 (12), p.e1003802-e1003802

2013

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To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2022-01, Vol.377 (1842), p.20200475

2022

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Horizontal gene transfer among host-associated microbes

Cell host & microbe, 2023-04, Vol.31 (4), p.513-527

2023

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When bacteria are phage playgrounds: interactions between viruses, cells, and mobile genetic elements

Current opinion in microbiology, 2022-12, Vol.70, p.102230-102230, Article 102230

2022

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Co-designing urban mobility solutions in a socio-technical transition context: Guidelines for participative service design

Journal of urban mobility, 2024-12, Vol.6, p.100086, Article 100086

2024

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Use of reacted and activated rubber in ultra-thin hot mixture asphalt overlay for wet-freeze climates

Journal of cleaner production, 2019-09, Vol.232, p.369-378

2019

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Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2022-10, Vol.377 (1861)

2022

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SWHORD simulator: A platform to evaluate energy transition targets in future energy systems with increasing renewable generation, electric vehicles, storage technologies, and hydrogen systems

Energy (Oxford), 2023-05, Vol.271, p.126977, Article 126977

2023

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Genetic exchanges are more frequent in bacteria encoding capsules

PLoS genetics, 2018-12, Vol.14 (12), p.e1007862-e1007862

2018

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Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages

Nature communications, 2024-01, Vol.15 (1), p.664-13, Article 664

2024

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Hijackers, hitchhikers, or co-drivers? The mysteries of mobilizable genetic elements

PLoS biology, 2024-08, Vol.22 (8), p.e3002796

2024

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The Dial-a-Ride Problem with Split Requests and Profits

Transportation science, 2015-05, Vol.49 (2), p.311-334

2015

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Improving Mass Transit Operations by Using AVL-Based Systems: A Survey

IEEE transactions on intelligent transportation systems, 2015-08, Vol.16 (4), p.1636-1653

2015

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Multidrug-resistant bacteria compensate for the epistasis between resistances

PLoS biology, 2017-04, Vol.15 (4), p.e2001741-e2001741

2017

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Industrial business associations improving the internationalisation of SMEs with digital platforms: A design science research approach

International journal of information management, 2020-08, Vol.53, p.102070-17, Article 102070

2020

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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer

Bacteriophages benefit from generalized transduction

Identification and characterization of thousands of bacteriophage satellites across bacteria

Ensemble approaches for regression: A survey

Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation

Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation

Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires

Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies

Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa

The genetic basis of Escherichia coli pathoadaptation to macrophages

To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites

Horizontal gene transfer among host-associated microbes

When bacteria are phage playgrounds: interactions between viruses, cells, and mobile genetic elements

Co-designing urban mobility solutions in a socio-technical transition context: Guidelines for participative service design

Use of reacted and activated rubber in ultra-thin hot mixture asphalt overlay for wet-freeze climates

Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations

SWHORD simulator: A platform to evaluate energy transition targets in future energy systems with increasing renewable generation, electric vehicles, storage technologies, and hydrogen systems

Genetic exchanges are more frequent in bacteria encoding capsules

Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages

Hijackers, hitchhikers, or co-drivers? The mysteries of mobilizable genetic elements

The Dial-a-Ride Problem with Split Requests and Profits

Improving Mass Transit Operations by Using AVL-Based Systems: A Survey

Multidrug-resistant bacteria compensate for the epistasis between resistances

Industrial business associations improving the internationalisation of SMEs with digital platforms: A design science research approach

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