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Engineered promoters enable constant gene expression at any copy number in bacteria

Nature biotechnology, 2018-04, Vol.36 (4), p.352-358

2018

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Entrainment to periodic initiation and transition rates in a computational model for gene translation

PloS one, 2014-05, Vol.9 (5), p.e96039-e96039

2014

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In vitro implementation of robust gene regulation in a synthetic biomolecular integral controller

Nature communications, 2019-12, Vol.10 (1), p.5760-12, Article 5760

2019

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Dynamic compensation, parameter identifiability, and equivariances

PLoS computational biology, 2017-04, Vol.13 (4), p.e1005447-e1005447

2017

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Global entrainment of transcriptional systems to periodic inputs

PLoS computational biology, 2010-04, Vol.6 (4), p.e1000739-e1000739

2010

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A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks

PLoS computational biology, 2020-02, Vol.16 (2), p.e1007681-e1007681

2020

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Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005571-e1005571

2017

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Mechanism-independent method for predicting response to multidrug combinations in bacteria

Proceedings of the National Academy of Sciences - PNAS, 2012-07, Vol.109 (30), p.12254-12259

2012

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Multi-modality in gene regulatory networks with slow promoter kinetics

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006784-e1006784

2019

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Detection of Multistability, Bifurcations, and Hysteresis in a Large Class of Biological Positive-Feedback Systems

Proceedings of the National Academy of Sciences - PNAS, 2004-02, Vol.101 (7), p.1822-1827

2004

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Inferring reaction network structure from single-cell, multiplex data, using toric systems theory

PLoS computational biology, 2019-12, Vol.15 (12), p.e1007311-e1007311

2019

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Computational aspects of feedback in neural circuits

PLoS computational biology, 2007-01, Vol.3 (1), p.e165-e165

2007

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Quorum-Sensing Synchronization of Synthetic Toggle Switches: A Design Based on Monotone Dynamical Systems Theory

PLoS computational biology, 2016-04, Vol.12 (4), p.e1004881-e1004881

2016

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Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2

Nature cell biology, 2003-04, Vol.5 (4), p.346-351

2003

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Monotone and near-monotone biochemical networks

Systems and synthetic biology, 2007-04, Vol.1 (2), p.59-87

Sontag, Eduardo D

2007

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A characterization of scale invariant responses in enzymatic networks

PLoS computational biology, 2012-11, Vol.8 (11), p.e1002748-e1002748

2012

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An explicit formula for minimizing the infected peak in an SIR epidemic model when using a fixed number of complete lockdowns

International journal of robust and nonlinear control, 2023-06, Vol.33 (9), p.4708-4731

Sontag, Eduardo D.

2023

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A mathematical model exhibiting the effect of DNA methylation on the stability boundary in cell-fate networks

Epigenetics, 2021-04, Vol.16 (4), p.436-457

2021

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Short-Term Circulating Tumor Cell Dynamics in Mouse Xenograft Models and Implications for Liquid Biopsy

Frontiers in oncology, 2020-11, Vol.10, p.601085-601085

2020

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Hybrid Systems III: Verification and Control

1996

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The Energy Costs of Insulators in Biochemical Networks

Biophysical journal, 2013-03, Vol.104 (6), p.1380-1390

2013

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Delicate Balances in Cancer Chemotherapy: Modeling Immune Recruitment and Emergence of Systemic Drug Resistance

Frontiers in immunology, 2020-06, Vol.11, p.1376

2020

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On the number of steady states in a multiple futile cycle

Journal of mathematical biology, 2008-07, Vol.57 (1), p.29-52

2008

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Comment on “In vivo flow cytometry reveals a circadian rhythm of circulating tumor cells”

Light, science & applications, 2021-09, Vol.10 (1), p.188-188, Article 188

2021

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Recovering biomolecular network dynamics from single-cell omics data requires three time points

NPJ systems biology and applications, 2024-08, Vol.10 (1), p.97-14

2024

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Engineered promoters enable constant gene expression at any copy number in bacteria

Entrainment to periodic initiation and transition rates in a computational model for gene translation

In vitro implementation of robust gene regulation in a synthetic biomolecular integral controller

Dynamic compensation, parameter identifiability, and equivariances

Global entrainment of transcriptional systems to periodic inputs

A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks

Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation

Mechanism-independent method for predicting response to multidrug combinations in bacteria

Multi-modality in gene regulatory networks with slow promoter kinetics

Detection of Multistability, Bifurcations, and Hysteresis in a Large Class of Biological Positive-Feedback Systems

Inferring reaction network structure from single-cell, multiplex data, using toric systems theory

Computational aspects of feedback in neural circuits

Quorum-Sensing Synchronization of Synthetic Toggle Switches: A Design Based on Monotone Dynamical Systems Theory

Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2

Monotone and near-monotone biochemical networks

A characterization of scale invariant responses in enzymatic networks

An explicit formula for minimizing the infected peak in an SIR epidemic model when using a fixed number of complete lockdowns

A mathematical model exhibiting the effect of DNA methylation on the stability boundary in cell-fate networks

Short-Term Circulating Tumor Cell Dynamics in Mouse Xenograft Models and Implications for Liquid Biopsy

Hybrid Systems III: Verification and Control

The Energy Costs of Insulators in Biochemical Networks

Delicate Balances in Cancer Chemotherapy: Modeling Immune Recruitment and Emergence of Systemic Drug Resistance

On the number of steady states in a multiple futile cycle

Comment on “In vivo flow cytometry reveals a circadian rhythm of circulating tumor cells”

Recovering biomolecular network dynamics from single-cell omics data requires three time points

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