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Lipid-Dependent Regulation of Ion Channels and G Protein–Coupled Receptors: Insights from Structures and Simulations

Annual review of pharmacology and toxicology, 2020-01, Vol.60 (1), p.31-50

2020

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PtdIns(4,5)P2 stabilizes active states of GPCRs and enhances selectivity of G-protein coupling

Nature (London), 2018-07, Vol.559 (7714), p.423-427

2018

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The Glycosphingolipid GM3 Modulates Conformational Dynamics of the Glucagon Receptor

Biophysical journal, 2020-07, Vol.119 (2), p.300-313

2020

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Gorge Motions of Acetylcholinesterase Revealed by Microsecond Molecular Dynamics Simulations

Scientific reports, 2017-06, Vol.7 (1), p.3219-12, Article 3219

2017

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Genome-wide profiling of WRKY genes involved in flavonoid biosynthesis in Erigeron breviscapus

Frontiers in plant science, 2024-06, Vol.15, p.1412574

2024

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LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins

Nature communications, 2023-11, Vol.14 (1), p.7774-7774, Article 7774

2023

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Genome-wide identification of bHLH transcription factors: Discovery of a candidate regulator related to flavonoid biosynthesis in Erigeron breviscapus

Frontiers in plant science, 2022-09, Vol.13, p.977649-977649

2022

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EbMYBP1, a R2R3-MYB transcription factor, promotes flavonoid biosynthesis in Erigeron breviscapus

Frontiers in plant science, 2022-07, Vol.13, p.946827-946827

2022

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Integrated Metabolomic and Transcriptomic Analysis and Identification of Dammarenediol-II Synthase Involved in Saponin Biosynthesis in Gynostemma longipes

Frontiers in plant science, 2022-03, Vol.13, p.852377

2022

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Hepatocyte cholesterol content modulates glucagon receptor signalling

Molecular metabolism (Germany), 2022-09, Vol.63, p.101530, Article 101530

2022

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Improved de novo Assembly of the Achlorophyllous Orchid Gastrodia elata

Frontiers in genetics, 2020-11, Vol.11, p.580568-580568

2020

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Understanding Voltage Gating of Providencia stuartii Porins at Atomic Level

PLoS computational biology, 2015-05, Vol.11 (5), p.e1004255-e1004255

2015

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State Dependent Interactions of Lipids with GPCR Revealed by MD Simulations using In Vivo-Mimetic Membranes

Biophysical journal, 2018-02, Vol.114 (3), p.274a-274a

2018

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GPCR Oligomerisation Modulation by Conformational State and Lipid Interactions Revealed by MD Simulations and Markov Models

Biophysical journal, 2021-02, Vol.120 (3), p.285a-285a

2021

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State-dependent Lipid Interactions with the A2a Receptor Revealed by MD Simulations Using In Vivo-Mimetic Membranes

Structure (London), 2019-02, Vol.27 (2), p.392-403.e3

2019

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PtdIns(4,5)P 2 stabilizes active states of GPCRs and enhances selectivity of G-protein coupling

Nature (London), 2018-07, Vol.559 (7714), p.423

2018

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Comparative transcriptome analysis revealed that dietary zymosan-A improved the immunity of Penaeus vannamei by regulating the TLR signaling pathway

Aquaculture, 2022-12, Vol.561, p.738603, Article 738603

2022

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PyLipID: A Python Package for Analysis of Protein–Lipid Interactions from Molecular Dynamics Simulations

Journal of chemical theory and computation, 2022-02, Vol.18 (2), p.1188-1201

2022

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Lipid-like to lipid-site: a protocol for simulation assisted interpretation of cryo-EM densities

Biophysical journal, 2022-02, Vol.121 (3), p.170a-170a

2022

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Modulation of adenosine A2a receptor oligomerization by receptor activation and PIP2 interactions

Structure (London), 2021-11, Vol.29 (11), p.1312-1325.e3

2021

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Predicting affinities of protein-lipid interactions using molecular simulations

Biophysical journal, 2022-02, Vol.121 (3), p.77a-77a

2022

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Mass spectrometry captures biased signalling and allosteric modulation of a G-protein-coupled receptor

Nature chemistry, 2022-12, Vol.14 (12), p.1375-1382

2022

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Modelling the Dynamic Organisation of the β2-Adrenergic Receptor in Crowded Membranes: From the Nano to the Mesoscale

Biophysical journal, 2020-02, Vol.118 (3), p.17a-17a

2020

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Pylipid: A Python Toolkit for Analysis of Lipid-Protein Interactions from MD Simulations

Biophysical journal, 2021-02, Vol.120 (3), p.48a-48a

2021

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Analysis of Protein-Cardiolipin Interactions in the E. coli Inner Membrane

Biophysical journal, 2021-02, Vol.120 (3), p.229a-229a

2021

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Lipid-Dependent Regulation of Ion Channels and G Protein–Coupled Receptors: Insights from Structures and Simulations

PtdIns(4,5)P2 stabilizes active states of GPCRs and enhances selectivity of G-protein coupling

The Glycosphingolipid GM3 Modulates Conformational Dynamics of the Glucagon Receptor

Gorge Motions of Acetylcholinesterase Revealed by Microsecond Molecular Dynamics Simulations

Genome-wide profiling of WRKY genes involved in flavonoid biosynthesis in Erigeron breviscapus

LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins

Genome-wide identification of bHLH transcription factors: Discovery of a candidate regulator related to flavonoid biosynthesis in Erigeron breviscapus

EbMYBP1, a R2R3-MYB transcription factor, promotes flavonoid biosynthesis in Erigeron breviscapus

Integrated Metabolomic and Transcriptomic Analysis and Identification of Dammarenediol-II Synthase Involved in Saponin Biosynthesis in Gynostemma longipes

Hepatocyte cholesterol content modulates glucagon receptor signalling

Improved de novo Assembly of the Achlorophyllous Orchid Gastrodia elata

Understanding Voltage Gating of Providencia stuartii Porins at Atomic Level

State Dependent Interactions of Lipids with GPCR Revealed by MD Simulations using In Vivo-Mimetic Membranes

GPCR Oligomerisation Modulation by Conformational State and Lipid Interactions Revealed by MD Simulations and Markov Models

State-dependent Lipid Interactions with the A2a Receptor Revealed by MD Simulations Using In Vivo-Mimetic Membranes

PtdIns(4,5)P 2 stabilizes active states of GPCRs and enhances selectivity of G-protein coupling

Comparative transcriptome analysis revealed that dietary zymosan-A improved the immunity of Penaeus vannamei by regulating the TLR signaling pathway

PyLipID: A Python Package for Analysis of Protein–Lipid Interactions from Molecular Dynamics Simulations

Lipid-like to lipid-site: a protocol for simulation assisted interpretation of cryo-EM densities

Modulation of adenosine A2a receptor oligomerization by receptor activation and PIP2 interactions

Predicting affinities of protein-lipid interactions using molecular simulations

Mass spectrometry captures biased signalling and allosteric modulation of a G-protein-coupled receptor

Modelling the Dynamic Organisation of the β2-Adrenergic Receptor in Crowded Membranes: From the Nano to the Mesoscale

Pylipid: A Python Toolkit for Analysis of Lipid-Protein Interactions from MD Simulations

Analysis of Protein-Cardiolipin Interactions in the E. coli Inner Membrane

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