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Decoding molecular markers and transcriptional circuitry of naive and primed states of human pluripotency

Stem cell research, 2021-05, Vol.53, p.102334-102334, Article 102334

2021

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The Synergistic Role of Tip α, Nucleolin and Ras in Helicobacter pylori Infection Regulates the Cell Fate Towards Inflammation or Apoptosis

Current microbiology, 2021-10, Vol.78 (10), p.3720-3732

2021

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Causes, consequences and solutions of phylogenetic incongruence

Briefings in bioinformatics, 2015-05, Vol.16 (3), p.536-548

Som, Anup

2015

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Network analysis of transcriptomic data uncovers molecular signatures and the interplay of mRNAs, lncRNAs, and miRNAs in human embryonic stem cells

Differentiation (London), 2024-01, Vol.135, p.100738-100738, Article 100738

2024

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The PluriNetWork: an electronic representation of the network underlying pluripotency in mouse, and its applications

PloS one, 2010-12, Vol.5 (12), p.e15165-e15165

2010

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Transcriptomic Analysis of Human Naïve and Primed Pluripotent Stem Cells

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2416, p.213

2022

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The LCNetWork: An electronic representation of the mRNA-lncRNA-miRNA regulatory network underlying mechanisms of non-small cell lung cancer in humans, and its explorative analysis

Computational biology and chemistry, 2022-12, Vol.101, p.107781-107781, Article 107781

2022

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Geographically Distinct North-East Indian Helicobacter pylori Strains are Highly Sensitive to Clarithromycin but are Levofloxacin Resistant

Indian journal of medical microbiology, 2019-07, Vol.37 (3), p.337-344

2019

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Reconstruction, visualization and explorative analysis of human pluripotency network

Network biology, 2017-09, Vol.7 (3), p.57-75

Narad, Priyanka

2017

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RNA-Seq analysis reveals pluripotency-associated genes and their interaction networks in human embryonic stem cells

Computational biology and chemistry, 2020-04, Vol.85, p.107239-107239, Article 107239

2020

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ExprEssence--revealing the essence of differential experimental data in the context of an interaction/regulation net-work

BMC systems biology, 2010-11, Vol.4 (1), p.164-164, Article 164

2010

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Common miRNAs, candidate genes and their interaction network across four subtypes of epithelial ovarian cancer

Bioinformation, 2021-08, Vol.17 (8), p.748-759

2021

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Comparative molecular dynamics simulation analysis of G20 and C92 mutations in c-di-GMP I riboswitch and the wild type with docked c-di-GMP ligand

Bioinformation, 2021-08, Vol.17 (8), p.721-726

2021

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Assigning new supergroups V and W to the Wolbachia diversity

Bioinformation, 2023-03, Vol.19 (3), p.336-340

Som, Anup

2023

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Insights into the dynamics of cyclic diguanosine monophosphate I riboswitch using molecular dynamics simulation

Indian journal of biochemistry & biophysics, 2021-06

2021

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Molecular characterization and phylogenetic analysis of babA gene of Helicobacter pylori isolated from Indian patients with gastrointestinal diseases

Gene, 2024-08, Vol.920, p.148526-148526, Article 148526

2024

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Primary antibiotic resistance of Helicobacter pylori in India over the past two decades: A systematic review

Helicobacter (Cambridge, Mass.), 2024-01, Vol.29 (1), p.e13057-e13057

2024

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Recombination in sarbecovirus lineage and mutations/insertions in spike protein are linked to the emergence and adaptation of SARS-CoV-2

Bioinformation, 2022-10, Vol.18 (10), p.951-961

Som, Anup

2022

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Analysis of Functional Status of Genetically Diverse OipA Gene in Indian Patients with Distinct Gastrointestinal Disease

Current microbiology, 2023-01, Vol.80 (1), p.35-35, Article 35

2023

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Design, synthesis, and molecular dynamics simulation studies of quinoline derivatives as protease inhibitors against SARS-CoV-2

Journal of biomolecular structure & dynamics, 2022-01, Vol.40 (21), p.10519-10542

2022

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Host-Pathogen protein-protein interactions reveal the key mechanisms behind the endosymbiotic association of Wolbachia with Brugia malayi

Network biology, 2023-12, Vol.13 (4), p.137-154

Sharma, Amresh Kumar

2023

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Design, synthesis and antimicrobial activity of novel quinoline derivatives: an in silico and in vitro study

Journal of biomolecular structure & dynamics, 2023-07, Vol.ahead-of-print (ahead-of-print), p.1-21

2023

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ML or NJ-MCL? A comparison between two robust phylogenetic methods

Computational biology and chemistry, 2009-10, Vol.33 (5), p.373-378

Som, Anup

2009

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The effect of heterotachy in multigene analysis using the neighbor joining method

Molecular phylogenetics and evolution, 2009-09, Vol.52 (3), p.846-851

2009

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A new approach for estimating the efficiencies of the nucleotide substitution models

Theory in biosciences = Theorie in den Biowissenschaften, 2007-04, Vol.125 (2), p.133-145

Som, Anup

2007

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Decoding molecular markers and transcriptional circuitry of naive and primed states of human pluripotency

The Synergistic Role of Tip α, Nucleolin and Ras in Helicobacter pylori Infection Regulates the Cell Fate Towards Inflammation or Apoptosis

Causes, consequences and solutions of phylogenetic incongruence

Network analysis of transcriptomic data uncovers molecular signatures and the interplay of mRNAs, lncRNAs, and miRNAs in human embryonic stem cells

The PluriNetWork: an electronic representation of the network underlying pluripotency in mouse, and its applications

Transcriptomic Analysis of Human Naïve and Primed Pluripotent Stem Cells

The LCNetWork: An electronic representation of the mRNA-lncRNA-miRNA regulatory network underlying mechanisms of non-small cell lung cancer in humans, and its explorative analysis

Geographically Distinct North-East Indian Helicobacter pylori Strains are Highly Sensitive to Clarithromycin but are Levofloxacin Resistant

Reconstruction, visualization and explorative analysis of human pluripotency network

RNA-Seq analysis reveals pluripotency-associated genes and their interaction networks in human embryonic stem cells

ExprEssence--revealing the essence of differential experimental data in the context of an interaction/regulation net-work

Common miRNAs, candidate genes and their interaction network across four subtypes of epithelial ovarian cancer

Comparative molecular dynamics simulation analysis of G20 and C92 mutations in c-di-GMP I riboswitch and the wild type with docked c-di-GMP ligand

Assigning new supergroups V and W to the Wolbachia diversity

Insights into the dynamics of cyclic diguanosine monophosphate I riboswitch using molecular dynamics simulation

Molecular characterization and phylogenetic analysis of babA gene of Helicobacter pylori isolated from Indian patients with gastrointestinal diseases

Primary antibiotic resistance of Helicobacter pylori in India over the past two decades: A systematic review

Recombination in sarbecovirus lineage and mutations/insertions in spike protein are linked to the emergence and adaptation of SARS-CoV-2

Analysis of Functional Status of Genetically Diverse OipA Gene in Indian Patients with Distinct Gastrointestinal Disease

Design, synthesis, and molecular dynamics simulation studies of quinoline derivatives as protease inhibitors against SARS-CoV-2

Host-Pathogen protein-protein interactions reveal the key mechanisms behind the endosymbiotic association of Wolbachia with Brugia malayi

Design, synthesis and antimicrobial activity of novel quinoline derivatives: an in silico and in vitro study

ML or NJ-MCL? A comparison between two robust phylogenetic methods

The effect of heterotachy in multigene analysis using the neighbor joining method

A new approach for estimating the efficiencies of the nucleotide substitution models

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