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A review of variable selection methods in Partial Least Squares Regression

Chemometrics and intelligent laboratory systems, 2012-08, Vol.118, p.62-69

2012

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Stable Core Gut Microbiota across the Freshwater-to-Saltwater Transition for Farmed Atlantic Salmon

Applied and environmental microbiology, 2018-01, Vol.84 (2)

2018

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CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data

Bioinformatics, 2015-06, Vol.31 (11), p.1708-1715

2015

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Evolution of the immune system influences speciation rates in teleost fishes

Nature genetics, 2016-10, Vol.48 (10), p.1204-1210

2016

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HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data

Microbiome, 2021-07, Vol.9 (1), p.1-12, Article 165

2021

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Transcriptomic and functional analysis of NaCl-induced stress in Enterococcus faecalis

PloS one, 2014-04, Vol.9 (4), p.e94571

2014

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Metagenome-mining indicates an association between bacteriocin presence and strain diversity in the infant gut

BMC genomics, 2023-05, Vol.24 (1), p.295-12, Article 295

2023

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Body fluid prediction from microbial patterns for forensic application

Forensic science international : genetics, 2017-09, Vol.30, p.10-17

2017

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Predicting the origin of stains from next generation sequencing mRNA data

Forensic science international : genetics, 2018-05, Vol.34, p.37-48

2018

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Prediction of high fecal propionate-to-butyrate ratios using 16S rRNA-based detection of bacterial groups with liquid array diagnostics

BioTechniques, 2023-01, Vol.74 (1), p.9-21

2023

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Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes

Frontiers in microbiology, 2022-02, Vol.12, p.822301-822301

2022

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Optimizing body fluid recognition from microbial taxonomic profiles

Forensic science international : genetics, 2018-11, Vol.37, p.13-20

2018

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A Globally Distributed Bacteroides caccae Strain Is the Most Prevalent Mother-Child Shared Bacteroidaceae Strain in a Large Scandinavian Cohort

Applied and environmental microbiology, 2023-07, Vol.89 (7), p.e0078923-e0078923

2023

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Comparative genomics of Enterococcus faecalis from healthy Norwegian infants

BMC genomics, 2009-04, Vol.10 (194), p.194-194

2009

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Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

Frontiers in microbiology, 2019-01, Vol.9, p.3208-3208

2019

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Reduced metagenome sequencing for strain-resolution taxonomic profiles

Microbiome, 2021-03, Vol.9 (1), p.79-79, Article 79

2021

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Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2 Enterococcus faecalis

BMC microbiology, 2011-01, Vol.11 (1), p.3-3

2011

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Comparing K-mer based methods for improved classification of 16S sequences

BMC bioinformatics, 2015-07, Vol.16 (1), p.205-205, Article 205

2015

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Microbial comparative pan-genomics using binomial mixture models

BMC genomics, 2009-08, Vol.10 (1), p.385-385

2009

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METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data

BMC bioinformatics, 2024-07, Vol.25 (1), p.237-16, Article 237

2024

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A Partial Least Squares based algorithm for parsimonious variable selection

Algorithms for molecular biology, 2011-12, Vol.6 (1), p.27-27, Article 27

2011

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The Abi Proteins and Their Involvement in Bacteriocin Self-Immunity

Journal of Bacteriology, 2010-04, Vol.192 (8), p.2068-2076

2010

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Target recognition, resistance, immunity and genome mining of class II bacteriocins from Gram-positive bacteria

Microbiology (Society for General Microbiology), 2011-12, Vol.157 (Pt 12), p.3256-3267

2011

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Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome

PloS one, 2017-11, Vol.12 (11), p.e0187542-e0187542

2017

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Global transcriptome response in Lactobacillus sakei during growth on ribose

BMC microbiology, 2011-06, Vol.11 (1), p.145-145

2011

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A review of variable selection methods in Partial Least Squares Regression

Stable Core Gut Microbiota across the Freshwater-to-Saltwater Transition for Farmed Atlantic Salmon

CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data

Evolution of the immune system influences speciation rates in teleost fishes

HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data

Transcriptomic and functional analysis of NaCl-induced stress in Enterococcus faecalis

Metagenome-mining indicates an association between bacteriocin presence and strain diversity in the infant gut

Body fluid prediction from microbial patterns for forensic application

Predicting the origin of stains from next generation sequencing mRNA data

Prediction of high fecal propionate-to-butyrate ratios using 16S rRNA-based detection of bacterial groups with liquid array diagnostics

Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes

Optimizing body fluid recognition from microbial taxonomic profiles

A Globally Distributed Bacteroides caccae Strain Is the Most Prevalent Mother-Child Shared Bacteroidaceae Strain in a Large Scandinavian Cohort

Comparative genomics of Enterococcus faecalis from healthy Norwegian infants

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

Reduced metagenome sequencing for strain-resolution taxonomic profiles

Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2 Enterococcus faecalis

Comparing K-mer based methods for improved classification of 16S sequences

Microbial comparative pan-genomics using binomial mixture models

METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data

A Partial Least Squares based algorithm for parsimonious variable selection

The Abi Proteins and Their Involvement in Bacteriocin Self-Immunity

Target recognition, resistance, immunity and genome mining of class II bacteriocins from Gram-positive bacteria

Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome

Global transcriptome response in Lactobacillus sakei during growth on ribose

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