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Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

Journal of proteome research, 2010-10, Vol.9 (10), p.4982-4991

2010

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Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data

Journal of proteome research, 2012-02, Vol.11 (2), p.1009-1017

2012

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Virtual alignment of pathology image series for multi-gigapixel whole slide images

Nature communications, 2023-07, Vol.14 (1), p.4502-14, Article 4502

2023

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Identification of Proteomic Features To Distinguish Benign Pulmonary Nodules from Lung Adenocarcinoma

Journal of proteome research, 2017-09, Vol.16 (9), p.3266-3276

2017

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lncDIFF: a novel quasi-likelihood method for differential expression analysis of non-coding RNA

BMC genomics, 2019-07, Vol.20 (1), p.539-539, Article 539

2019

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Comparative Shotgun Proteomics Using Spectral Count Data and Quasi-Likelihood Modeling

Journal of proteome research, 2010-08, Vol.9 (8), p.4295-4305

2010

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Proteomic analysis of oropharyngeal carcinomas reveals novel HPV‐associated biological pathways

International journal of cancer, 2013-02, Vol.132 (3), p.568-579

2013

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Glucose-Independent Glutamine Metabolism via TCA Cycling for Proliferation and Survival in B Cells

Cell metabolism, 2012-01, Vol.15 (1), p.110-121

2012

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Proteogenomic landscape of squamous cell lung cancer

Nature communications, 2019-08, Vol.10 (1), p.3578-17, Article 3578

2019

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Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer

Molecular & cellular proteomics, 2016-09, Vol.15 (9), p.2924-2938

2016

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Increased Epidermal Growth Factor Receptor Gene Copy Number Is Associated With Poor Prognosis in Head and Neck Squamous Cell Carcinomas

Journal of clinical oncology, 2006-09, Vol.24 (25), p.4170-4176

2006

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Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis

Molecular & cellular proteomics, 2009-08, Vol.8 (8), p.1988-1998

2009

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Comparison of Protein Immunoprecipitation-Multiple Reaction Monitoring with ELISA for Assay of Biomarker Candidates in Plasma

Journal of proteome research, 2013-12, Vol.12 (12), p.5996-6003

2013

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Histoecology: Applying Ecological Principles and Approaches to Describe and Predict Tumor Ecosystem Dynamics Across Space and Time

Cancer control, 2020-07, Vol.27 (3), p.1073274820946804-1073274820946804

2020

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Quantitative analysis of CDX2 protein expression improves its clinical utility as a prognostic biomarker in stage II and III colon cancer

European journal of cancer (1990), 2021-02, Vol.144, p.91-100

2021

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Proteogenomic Analysis Reveals Unanticipated Adaptations of Colorectal Tumor Cells to Deficiencies in DNA Mismatch Repair

Cancer research (Chicago, Ill.), 2014-01, Vol.74 (1), p.387-397

2014

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Deep Learning of Histopathology Images at the Single Cell Level

Frontiers in artificial intelligence, 2021-09, Vol.4, p.754641-754641

2021

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A Bioinformatics Workflow for Variant Peptide Detection in Shotgun Proteomics

Molecular & cellular proteomics, 2011-05, Vol.10 (5), p.M110.006536-M110.006536, Article M110.006536

2011

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Gene Expression Differences Associated with Human Papillomavirus Status in Head and Neck Squamous Cell Carcinoma

Clinical cancer research, 2006-02, Vol.12 (3), p.701-709

2006

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Proteomic Consequences of a Single Gene Mutation in a Colorectal Cancer Model

Journal of proteome research, 2012-02, Vol.11 (2), p.1184-1195

2012

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Relative protein quantification and accessible biology in lung tumor proteomes from four LC‐MS/MS discovery platforms

Proteomics (Weinheim), 2017-03, Vol.17 (6), p.np-n/a

2017

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Human papillomavirus in early laryngeal carcinoma

The Laryngoscope, 2009-08, Vol.119 (8), p.1531-1537

2009

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Proteogenomic characterization of human colon and rectal cancer

Nature (London), 2014-09, Vol.513 (7518), p.382-387

2014

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Evaluation of Strong Cation Exchange versus Isoelectric Focusing of Peptides for Multidimensional Liquid Chromatography-Tandem Mass Spectrometry

Journal of proteome research, 2008-12, Vol.7 (12), p.5286-5294

2008

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Effects of Tobacco Smoking on the Tumor Immune Microenvironment in Head and Neck Squamous Cell Carcinoma

Clinical cancer research, 2020-03, Vol.26 (6), p.1474-1485

2020

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Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data

Virtual alignment of pathology image series for multi-gigapixel whole slide images

Identification of Proteomic Features To Distinguish Benign Pulmonary Nodules from Lung Adenocarcinoma

lncDIFF: a novel quasi-likelihood method for differential expression analysis of non-coding RNA

Comparative Shotgun Proteomics Using Spectral Count Data and Quasi-Likelihood Modeling

Proteomic analysis of oropharyngeal carcinomas reveals novel HPV‐associated biological pathways

Glucose-Independent Glutamine Metabolism via TCA Cycling for Proliferation and Survival in B Cells

Proteogenomic landscape of squamous cell lung cancer

Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer

Increased Epidermal Growth Factor Receptor Gene Copy Number Is Associated With Poor Prognosis in Head and Neck Squamous Cell Carcinomas

Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis

Comparison of Protein Immunoprecipitation-Multiple Reaction Monitoring with ELISA for Assay of Biomarker Candidates in Plasma

Histoecology: Applying Ecological Principles and Approaches to Describe and Predict Tumor Ecosystem Dynamics Across Space and Time

Quantitative analysis of CDX2 protein expression improves its clinical utility as a prognostic biomarker in stage II and III colon cancer

Proteogenomic Analysis Reveals Unanticipated Adaptations of Colorectal Tumor Cells to Deficiencies in DNA Mismatch Repair

Deep Learning of Histopathology Images at the Single Cell Level

A Bioinformatics Workflow for Variant Peptide Detection in Shotgun Proteomics

Gene Expression Differences Associated with Human Papillomavirus Status in Head and Neck Squamous Cell Carcinoma

Proteomic Consequences of a Single Gene Mutation in a Colorectal Cancer Model

Relative protein quantification and accessible biology in lung tumor proteomes from four LC‐MS/MS discovery platforms

Human papillomavirus in early laryngeal carcinoma

Proteogenomic characterization of human colon and rectal cancer

Evaluation of Strong Cation Exchange versus Isoelectric Focusing of Peptides for Multidimensional Liquid Chromatography-Tandem Mass Spectrometry

Effects of Tobacco Smoking on the Tumor Immune Microenvironment in Head and Neck Squamous Cell Carcinoma

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