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Improved contact predictions using the recognition of protein like contact patterns

PLoS computational biology, 2014-11, Vol.10 (11), p.e1003889-e1003889

2014

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Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

PLoS genetics, 2017-02, Vol.13 (2), p.e1006508-e1006508

2017

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Improving contact prediction along three dimensions

PLoS computational biology, 2014-10, Vol.10 (10), p.e1003847-e1003847

2014

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The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer

Nature communications, 2022-05, Vol.13 (1), p.2915-20, Article 2915

2022

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PconsD: ultra rapid, accurate model quality assessment for protein structure prediction

Bioinformatics, 2013-07, Vol.29 (14), p.1817-1818

2013

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Urinary Proteins of Female Domestic Dog ( Canis familiaris ) during Ovarian Cycle

Veterinary sciences, 2023-04, Vol.10 (4), p.292

2023

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Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae

Computational and structural biotechnology journal, 2020-01, Vol.18, p.271-286

2020

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Membrane protein contact and structure prediction using co-evolution in conjunction with machine learning

PloS one, 2017-05, Vol.12 (5), p.e0177866-e0177866

2017

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Assessment of global and local model quality in CASP8 using Pcons and ProQ

Proteins, structure, function, and bioinformatics, 2009, Vol.77 (S9), p.167-172

2009

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Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery

Emerging microbes & infections, 2019-01, Vol.8 (1), p.109-118

2019

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HARP: a database of structural impacts of systematic missense mutations in drug targets of Mycobacterium leprae

Computational and structural biotechnology journal, 2020-01, Vol.18, p.3692-3704

2020

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PconsFold: improved contact predictions improve protein models

Bioinformatics, 2014-09, Vol.30 (17), p.i482-i488

2014

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PconsC: combination of direct information methods and alignments improves contact prediction

Bioinformatics, 2013-07, Vol.29 (14), p.1815-1816

2013

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Predicting accurate contacts in thousands of Pfam domain families using PconsC3

Bioinformatics (Oxford, England), 2017-09, Vol.33 (18), p.2859-2866

2017

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The Collagen Receptor Discoidin Domain Receptor 1b Enhances Integrin β1-Mediated Cell Migration by Interacting With Talin and Promoting Rac1 Activation

Frontiers in cell and developmental biology, 2022-03, Vol.10, p.836797-836797

2022

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The influence of manual semen collection in male trained dogs (Canis familiaris), in the presence or absence of a female in estrus, on the concentrations of cortisol, oxytocin, prolactin and testosterone

PloS one, 2023-02, Vol.18 (2), p.e0278524-e0278524

2023

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Early computational detection of potential high-risk SARS-CoV-2 variants

Computers in biology and medicine, 2023-03, Vol.155, p.106618-106618, Article 106618

2023

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Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis

Matrix biology, 2017-01, Vol.57-58 (1), p.258-271

2017

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Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

Nucleic acids research, 2020-01, Vol.48 (D1), p.D314-D319

2020

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Membrane remodeling capacity of a vesicle‐inducing glycosyltransferase

The FEBS journal, 2014-08, Vol.281 (16), p.3667-3684

2014

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Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus

Database : the journal of biological databases and curation, 2019, Vol.2019 (1)

2019

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Improved predictions by Pcons.net using multiple templates

Bioinformatics, 2011-02, Vol.27 (3), p.426-427

2011

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The influence of manual semen collection in male trained dogs

PloS one, 2023-02, Vol.18 (2), p.e0278524

2023

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3D Deep Learning for Biological Function Prediction from Physical Fields

2020 International Conference on 3D Vision (3DV), 2020, p.928-937

2020

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Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns: e1003889

PLoS computational biology, 2014-11, Vol.10 (11)

2014

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Improved contact predictions using the recognition of protein like contact patterns

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

Improving contact prediction along three dimensions

The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer

PconsD: ultra rapid, accurate model quality assessment for protein structure prediction

Urinary Proteins of Female Domestic Dog ( Canis familiaris ) during Ovarian Cycle

Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae

Membrane protein contact and structure prediction using co-evolution in conjunction with machine learning

Assessment of global and local model quality in CASP8 using Pcons and ProQ

Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery

HARP: a database of structural impacts of systematic missense mutations in drug targets of Mycobacterium leprae

PconsFold: improved contact predictions improve protein models

PconsC: combination of direct information methods and alignments improves contact prediction

Predicting accurate contacts in thousands of Pfam domain families using PconsC3

The Collagen Receptor Discoidin Domain Receptor 1b Enhances Integrin β1-Mediated Cell Migration by Interacting With Talin and Promoting Rac1 Activation

The influence of manual semen collection in male trained dogs (Canis familiaris), in the presence or absence of a female in estrus, on the concentrations of cortisol, oxytocin, prolactin and testosterone

Early computational detection of potential high-risk SARS-CoV-2 variants

Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

Membrane remodeling capacity of a vesicle‐inducing glycosyltransferase

Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus

Improved predictions by Pcons.net using multiple templates

The influence of manual semen collection in male trained dogs

3D Deep Learning for Biological Function Prediction from Physical Fields

Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns: e1003889

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