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Association between baseline abundance of Peptoniphilus, a Gram-positive anaerobic coccus, and wound healing outcomes of DFUs

PloS one, 2020-01, Vol.15 (1), p.e0227006-e0227006

2020

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Docking by structural similarity at protein-protein interfaces

Proteins, structure, function, and bioinformatics, 2010-11, Vol.78 (15), p.3235-3241

2010

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Commensal Escherichia coli Strains Can Promote Intestinal Inflammation via Differential Interleukin-6 Production

Frontiers in immunology, 2018-10, Vol.9, p.2318-2318

2018

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Short term dynamics of the sputum microbiome among COPD patients

PloS one, 2018-03, Vol.13 (3), p.e0191499

2018

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Protein docking by the interface structure similarity: how much structure is needed?

PloS one, 2012-02, Vol.7 (2), p.e31349-e31349

2012

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The MSDIN family in amanitin-producing mushrooms and evolution of the prolyl oligopeptidase genes

IMA fungus, 2018-12, Vol.9 (2), p.225-242

2018

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Donor‐derived cell‐free DNA levels predict graft injury in liver transplant recipients

American journal of transplantation, 2022-02, Vol.22 (2), p.532-540

2022

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Ganciclovir and maribavir susceptibility phenotypes of cytomegalovirus UL97 ATP binding region mutations detected by expanded genotypic testing

Antiviral research, 2021-09, Vol.193, p.105139-105139, Article 105139

2021

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Combined Metagenomic Viral Detection and Donor-Derived Cell-Free DNA Quantification in Plasma From Kidney Transplant Recipients

Transplantation proceedings, 2024-07, Vol.56 (6), p.1522-1530

2024

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424.2: Temporal and Diversity Characterization of Metagenomic Viral Detection in Kidney Transplant Recipients

Transplantation, 2022-09, Vol.106 (9S), p.S473-S473

2022

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Metagenomic Detection of Clinical and Potentially Undiagnosed Infections in Kidney Transplant Recipients: FR-PO801

Journal of the American Society of Nephrology, 2022-11, Vol.33 (11S), p.542-543

2022

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Serial Testing of Blood Gene Expression and Donor-Derived Cell-Free DNA for Predicting Future Kidney Allograft Failure: FR-PO786

Journal of the American Society of Nephrology, 2022-11, Vol.33 (11S), p.538-539

2022

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Combining Blood Gene Expression and Cellfree DNA to Diagnose Subclinical Rejection in Kidney Transplant Recipients

Clinical journal of the American Society of Nephrology, 2021-10, Vol.16 (10), p.1539-1551

2021

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1210. K-mer Profiling Powered by Reference-assisted Assembly of NGS Data: A Highly Sensitive Protocol to Infer the Plasma Microbiome Using Cell-free DNA Sequence Data

Open forum infectious diseases, 2020-12, Vol.7 (Supplement_1), p.S626-S627

2020

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Microbial successions are associated with changes in chemical profiles of a model refrigerated fresh pork sausage during an 80-day shelf life study

Applied and Environmental Microbiology, 2014-09, Vol.80 (17), p.5178-5194

2014

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Alignment behaviors of short peptides provide a roadmap for functional profiling of metagenomic data

BMC genomics, 2015-12, Vol.16 (1087), p.1080-1080, Article 1080

2015

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1786. An Automated Method to Assess Oligonucleotide Primer and Probe Complementarity to Genomic Targets in Infectious Disease qPCR Assays

Open forum infectious diseases, 2019-10, Vol.6 (Supplement_2), p.S657-S658

2019

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A real-time PCR assay for accurate quantification of the individual members of the Altered Schaedler Flora microbiota in gnotobiotic mice

Journal of microbiological methods, 2017-04, Vol.135, p.52-62

2017

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Captive Common Marmosets (Callithrix jacchus) Are Colonized throughout Their Lives by a Community of Bifidobacterium Species with Species-Specific Genomic Content That Can Support Adaptation to Distinct Metabolic Niches

mBio, 2021-08, Vol.12 (4), p.e0115321

2021

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Docking by Structural Similarity at Protein-Protein Interfaces

Biophysical journal, 2010-01, Vol.98 (3), p.196a-196a

2010

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268. Fungal NGS: Identification of Etiological Agents of Invasive Fungal Infection by High-throughput Sequencing

Open forum infectious diseases, 2019-10, Vol.6 (Supplement_2), p.S148-S149

2019

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Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice

Genome biology, 2014-01, Vol.15 (12), p.552-552, Article 552

2014

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Captive Common Marmosets ( Callithrix jacchus ) Are Colonized throughout Their Lives by a Community of italic toggle="yes">Bifidobacterium /italic> Species with Species-Specific Genomic Content That Can Support Adaptation to Distinct Metabolic Niches

mBio, 2021-08, Vol.12 (4)

2021

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Vira-Ome: A Tool to Detect DNA Viruses in the Cell-Free DNA

Biology of blood and marrow transplantation, 2020-03, Vol.26 (3), p.S337-S338

2020

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Clinical and Genomic Characterization of Recurrent Enterococcal Bloodstream Infection in Patients With Acute Leukemia

Open forum infectious diseases, 2018-06, Vol.5 (6), p.ofy107-ofy107

2018

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Association between baseline abundance of Peptoniphilus, a Gram-positive anaerobic coccus, and wound healing outcomes of DFUs

Docking by structural similarity at protein-protein interfaces

Commensal Escherichia coli Strains Can Promote Intestinal Inflammation via Differential Interleukin-6 Production

Short term dynamics of the sputum microbiome among COPD patients

Protein docking by the interface structure similarity: how much structure is needed?

The MSDIN family in amanitin-producing mushrooms and evolution of the prolyl oligopeptidase genes

Donor‐derived cell‐free DNA levels predict graft injury in liver transplant recipients

Ganciclovir and maribavir susceptibility phenotypes of cytomegalovirus UL97 ATP binding region mutations detected by expanded genotypic testing

Combined Metagenomic Viral Detection and Donor-Derived Cell-Free DNA Quantification in Plasma From Kidney Transplant Recipients

424.2: Temporal and Diversity Characterization of Metagenomic Viral Detection in Kidney Transplant Recipients

Metagenomic Detection of Clinical and Potentially Undiagnosed Infections in Kidney Transplant Recipients: FR-PO801

Serial Testing of Blood Gene Expression and Donor-Derived Cell-Free DNA for Predicting Future Kidney Allograft Failure: FR-PO786

Combining Blood Gene Expression and Cellfree DNA to Diagnose Subclinical Rejection in Kidney Transplant Recipients

1210. K-mer Profiling Powered by Reference-assisted Assembly of NGS Data: A Highly Sensitive Protocol to Infer the Plasma Microbiome Using Cell-free DNA Sequence Data

Microbial successions are associated with changes in chemical profiles of a model refrigerated fresh pork sausage during an 80-day shelf life study

Alignment behaviors of short peptides provide a roadmap for functional profiling of metagenomic data

1786. An Automated Method to Assess Oligonucleotide Primer and Probe Complementarity to Genomic Targets in Infectious Disease qPCR Assays

A real-time PCR assay for accurate quantification of the individual members of the Altered Schaedler Flora microbiota in gnotobiotic mice

Captive Common Marmosets (Callithrix jacchus) Are Colonized throughout Their Lives by a Community of Bifidobacterium Species with Species-Specific Genomic Content That Can Support Adaptation to Distinct Metabolic Niches

Docking by Structural Similarity at Protein-Protein Interfaces

268. Fungal NGS: Identification of Etiological Agents of Invasive Fungal Infection by High-throughput Sequencing

Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice

Captive Common Marmosets ( Callithrix jacchus ) Are Colonized throughout Their Lives by a Community of italic toggle="yes">Bifidobacterium /italic> Species with Species-Specific Genomic Content That Can Support Adaptation to Distinct Metabolic Niches

Vira-Ome: A Tool to Detect DNA Viruses in the Cell-Free DNA

Clinical and Genomic Characterization of Recurrent Enterococcal Bloodstream Infection in Patients With Acute Leukemia

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