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In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Molecular cell, 2016-05, Vol.62 (4), p.603-617

2016

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Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment

Advances in colloid and interface science, 2016-06, Vol.232, p.49-56

Sim, Adelene Y.L.

2016

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Designing dual inhibitors of Mdm2/MdmX: Unexpected coupling of water with gatekeeper Y100/99

Proteins, structure, function, and bioinformatics, 2017-08, Vol.85 (8), p.1493-1506

2017

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Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation

RNA (Cambridge), 2011-06, Vol.17 (6), p.1066-1075

2011

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Clustering to identify RNA conformations constrained by secondary structure

Proceedings of the National Academy of Sciences - PNAS, 2011-03, Vol.108 (9), p.3590-3595

2011

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Development of a risk classification system combining TN-categories and circulating EBV DNA for non-metastatic NPC in 10,149 endemic cases

Therapeutic advances in medical oncology, 2021, Vol.13, p.17588359211052417-17588359211052417

2021

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Modeling nucleic acids

Current opinion in structural biology, 2012-06, Vol.22 (3), p.273-278

2012

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Structure mapping of dengue and Zika viruses reveals functional long-range interactions

Nature communications, 2019-03, Vol.10 (1), p.1408-1408, Article 1408

2019

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Homology Modeling of RNA Using Hierarchical Natural Moves

Biophysical journal, 2017-02, Vol.112 (3), p.369a-369a

2017

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The role of gelsolin domain 3 in familial amyloidosis (Finnish type)

Proceedings of the National Academy of Sciences - PNAS, 2019-07, Vol.116 (28), p.13958-13963

2019

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Targeting YAP/TAZ-TEAD protein-protein interactions using fragment-based and computational modeling approaches

PloS one, 2017-06, Vol.12 (6), p.e0178381-e0178381

2017

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Voxel-based radiomics outlines spatial heterogeneity of cerebral radiation necrosis (RN) associated with bevacizumab (Bev) response in head and neck radiotherapy (RT) patients

Journal of clinical oncology, 2022-06, Vol.40 (16_suppl), p.e18063-e18063

2022

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Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody

Structure (London), 2019-02, Vol.27 (2), p.253-267.e8

2019

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Abstract PO-074: Molecular signatures of radioresistance in radioresistant cancer cell lines

Clinical cancer research, 2021-04, Vol.27 (8_Supplement), p.PO-074-PO-074

2021

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Modeling and design by hierarchical natural moves

Proceedings of the National Academy of Sciences - PNAS, 2012-02, Vol.109 (8), p.2890-2895

2012

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Topology independent comparison of RNA 3D structures using the CLICK algorithm

Nucleic acids research, 2017-01, Vol.45 (1), p.e5

2017

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Cluster-based radiomics reveal spatial heterogeneity of bevacizumab response for treatment of radiotherapy-induced cerebral necrosis

Computational and structural biotechnology journal, 2024-12, Vol.23, p.43-51

2024

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How does a hydrocarbon staple affect peptide hydrophobicity?

Journal of computational chemistry, 2015-04, Vol.36 (10), p.773-784

2015

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R248Q mutation-Beyond p53-DNA binding

Proteins, structure, function, and bioinformatics, 2015-12, Vol.83 (12), p.2240-2250

2015

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Tertiary Element Interaction in HIV‑1 TAR

Journal of chemical information and modeling, 2016-09, Vol.56 (9), p.1746-1754

2016

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A genome-wide association study of radiotherapy induced toxicity in head and neck cancer patients identifies a susceptibility locus associated with mucositis

British journal of cancer, 2022-04, Vol.126 (7), p.1082-1090

2022

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Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding

RNA (Cambridge), 2010-04, Vol.16 (4), p.708-719

2010

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NEAR trial: A single-arm phase II trial of neoadjuvant apalutamide monotherapy and radical prostatectomy in intermediate- and high-risk prostate cancer

Prostate cancer and prostatic diseases, 2022-04, Vol.25 (4), p.741-748

2022

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Mixing and Matching Detergents for Membrane Protein NMR Structure Determination

Journal of the American Chemical Society, 2009-06, Vol.131 (21), p.7320-7326

2009

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Dynamic Charge Interactions Create Surprising Rigidity in the ER/K αa-Helical Protein Motif

Proceedings of the National Academy of Sciences - PNAS, 2008-09, Vol.105 (36), p.13356-13361

2008

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In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment

Designing dual inhibitors of Mdm2/MdmX: Unexpected coupling of water with gatekeeper Y100/99

Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation

Clustering to identify RNA conformations constrained by secondary structure

Development of a risk classification system combining TN-categories and circulating EBV DNA for non-metastatic NPC in 10,149 endemic cases

Modeling nucleic acids

Structure mapping of dengue and Zika viruses reveals functional long-range interactions

Homology Modeling of RNA Using Hierarchical Natural Moves

The role of gelsolin domain 3 in familial amyloidosis (Finnish type)

Targeting YAP/TAZ-TEAD protein-protein interactions using fragment-based and computational modeling approaches

Voxel-based radiomics outlines spatial heterogeneity of cerebral radiation necrosis (RN) associated with bevacizumab (Bev) response in head and neck radiotherapy (RT) patients

Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody

Abstract PO-074: Molecular signatures of radioresistance in radioresistant cancer cell lines

Modeling and design by hierarchical natural moves

Topology independent comparison of RNA 3D structures using the CLICK algorithm

Cluster-based radiomics reveal spatial heterogeneity of bevacizumab response for treatment of radiotherapy-induced cerebral necrosis

How does a hydrocarbon staple affect peptide hydrophobicity?

R248Q mutation-Beyond p53-DNA binding

Tertiary Element Interaction in HIV‑1 TAR

A genome-wide association study of radiotherapy induced toxicity in head and neck cancer patients identifies a susceptibility locus associated with mucositis

Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding

NEAR trial: A single-arm phase II trial of neoadjuvant apalutamide monotherapy and radical prostatectomy in intermediate- and high-risk prostate cancer

Mixing and Matching Detergents for Membrane Protein NMR Structure Determination

Dynamic Charge Interactions Create Surprising Rigidity in the ER/K αa-Helical Protein Motif

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