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GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs

Nucleic acids research, 2022-07, Vol.50 (W1), p.W392

2022

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RLPredictiOme, a Machine Learning-Derived Method for High-Throughput Prediction of Plant Receptor-like Proteins, Reveals Novel Classes of Transmembrane Receptors

International journal of molecular sciences, 2022-10, Vol.23 (20), p.12176

2022

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Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm

BMC bioinformatics, 2021-01, Vol.22 (1), p.1-20, Article 1

2021

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visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level

BMC bioinformatics, 2020-03, Vol.21 (Suppl 2), p.80-80, Article 80

2020

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ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces

BMC bioinformatics, 2020-04, Vol.21 (1), p.143-25, Article 143

2020

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Vermont: a multi-perspective visual interactive platform for mutational analysis

BMC bioinformatics, 2017-09, Vol.18 (Suppl 10), p.403-403, Article 403

2017

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GRaSP: a graph-based residue neighborhood strategy to predict binding sites

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i726-i734

2020

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nAPOLI: A Graph-Based Strategy to Detect and Visualize Conserved Protein-Ligand Interactions in Large-Scale

IEEE/ACM transactions on computational biology and bioinformatics, 2020-07, Vol.17 (4), p.1317-1328

2020

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GASS-Metal: identifying metal-binding sites on protein structures using genetic algorithms

Briefings in bioinformatics, 2022-09, Vol.23 (5)

2022

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How to compute protein residue contacts more accurately?

Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 2018, p.60-67

2018

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VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation

BMC proceedings, 2014-08, Vol.8 (Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica), p.S4-S4, Article S4

2014

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A Hierarchical and Scalable Strategy for Protein Structural Classification

Bioinformatics and Biomedical Engineering, p.379-390

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CALI: A Novel Visual Model for Frequent Pattern Mining in Protein-Ligand Graphs

2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE), 2017, p.352-358

2017

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An Interactive Strategy to Visualize Common Subgraphs in Protein-Ligand Interaction

Bioinformatics and Biomedical Engineering, p.383-394

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Using supervised learning successful descriptors to perform protein structural classification through unsupervised learning

2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018, p.75-78

2018

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ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot

2012 IEEE Symposium on Biological Data Visualization (BioVis), 2012, p.49-56

2012

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GReMLIN: A Graph Mining Strategy to Infer Protein-Ligand Interaction Patterns

2016 IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE), 2016, p.28-35

2016

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Gold Nanoparticles Treatment Reverses Brain Damage in Alzheimer’s Disease Model

Molecular neurobiology, 2020-02, Vol.57 (2), p.926-936

2020

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Macrophages and Schwann cell TRPA1 mediate chronic allodynia in a mouse model of complex regional pain syndrome type I

Brain, behavior, and immunity, 2020-08, Vol.88, p.535-546

2020

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A Retrospective, Observational Study of 12 Cases of Expanded-Access Customized Phage Therapy: Production, Characteristics, and Clinical Outcomes

Clinical infectious diseases, 2023-10, Vol.77 (8), p.1079-1091

2023

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Neonatal resveratrol treatment in cerebral palsy model recovers neurodevelopment impairments by restoring the skeletal muscle morphology and decreases microglial activation in the cerebellum

Experimental neurology, 2024-08, Vol.378, p.114835, Article 114835

2024

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Computational prediction of potential inhibitors for SARS-COV-2 main protease based on machine learning, docking, MM-PBSA calculations, and metadynamics

PloS one, 2022-04, Vol.17 (4), p.e0267471-e0267471

2022

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Leaf arginine spraying improves leaf gas exchange under water deficit and root antioxidant responses during the recovery period

Plant physiology and biochemistry, 2021-05, Vol.162, p.315-326

2021

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Towards a software architecture to manage occupational safety at grain handling and storage facilities

Scientific reports, 2022-02, Vol.12 (1), p.2612-2612, Article 2612

2022

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Ketamine plus Alcohol: What We Know and What We Can Expect about This

International journal of molecular sciences, 2022-07, Vol.23 (14), p.7800

2022

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GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs

RLPredictiOme, a Machine Learning-Derived Method for High-Throughput Prediction of Plant Receptor-like Proteins, Reveals Novel Classes of Transmembrane Receptors

Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm

visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level

ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces

Vermont: a multi-perspective visual interactive platform for mutational analysis

GRaSP: a graph-based residue neighborhood strategy to predict binding sites

nAPOLI: A Graph-Based Strategy to Detect and Visualize Conserved Protein-Ligand Interactions in Large-Scale

GASS-Metal: identifying metal-binding sites on protein structures using genetic algorithms

How to compute protein residue contacts more accurately?

VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation

A Hierarchical and Scalable Strategy for Protein Structural Classification

CALI: A Novel Visual Model for Frequent Pattern Mining in Protein-Ligand Graphs

An Interactive Strategy to Visualize Common Subgraphs in Protein-Ligand Interaction

Using supervised learning successful descriptors to perform protein structural classification through unsupervised learning

ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot

GReMLIN: A Graph Mining Strategy to Infer Protein-Ligand Interaction Patterns

Gold Nanoparticles Treatment Reverses Brain Damage in Alzheimer’s Disease Model

Macrophages and Schwann cell TRPA1 mediate chronic allodynia in a mouse model of complex regional pain syndrome type I

A Retrospective, Observational Study of 12 Cases of Expanded-Access Customized Phage Therapy: Production, Characteristics, and Clinical Outcomes

Neonatal resveratrol treatment in cerebral palsy model recovers neurodevelopment impairments by restoring the skeletal muscle morphology and decreases microglial activation in the cerebellum

Computational prediction of potential inhibitors for SARS-COV-2 main protease based on machine learning, docking, MM-PBSA calculations, and metadynamics

Leaf arginine spraying improves leaf gas exchange under water deficit and root antioxidant responses during the recovery period

Towards a software architecture to manage occupational safety at grain handling and storage facilities

Ketamine plus Alcohol: What We Know and What We Can Expect about This

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