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A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

Cell host & microbe, 2020-04, Vol.27 (4), p.671-680.e2

2020

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Peptide binding predictions for HLA DR, DP and DQ molecules

BMC bioinformatics, 2010-11, Vol.11 (1), p.568-568, Article 568

2010

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Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

Immunity (Cambridge, Mass.), 2017-02, Vol.46 (2), p.315-326

2017

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Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

BMC bioinformatics, 2007-09, Vol.8 (1), p.361-361, Article 361

2007

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T cells in atherosclerosis

International immunology, 2013-11, Vol.25 (11), p.615-622

2013

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Are Ancient Durum Wheats Less Toxic to Celiac Patients? A Study of α-Gliadin from Graziella Ra and Kamut

TheScientificWorld, 2012-01, Vol.2012 (2012), p.1-8

2012

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Dengue virus infection elicits highly polarized CX3CR1⁺ cytotoxic CD4⁺ T cells associated with protective immunity

Proceedings of the National Academy of Sciences - PNAS, 2015-08, Vol.112 (31), p.E4256-E4263

2015

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A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

PLoS computational biology, 2008-04, Vol.4 (4), p.e1000048-e1000048

2008

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A large fraction of HLA class I ligands are proteasome-generated spliced peptides

Science (American Association for the Advancement of Science), 2016-10, Vol.354 (6310), p.354-358

2016

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Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

BMC bioinformatics, 2009-11, Vol.10 (1), p.394-394, Article 394

2009

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HLA class I supertypes: a revised and updated classification

BMC immunology, 2008-01, Vol.9 (1), p.1-1, Article 1

2008

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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity

The Journal of experimental medicine, 2014-10, Vol.211 (11), p.2231-2248

2014

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Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia

Blood, 2014-07, Vol.124 (3), p.453-462

2014

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NetMHCpan, a method for MHC class I binding prediction beyond humans

Immunogenetics (New York), 2009-01, Vol.61 (1), p.1-13

2009

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Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8⁺ T cells

Proceedings of the National Academy of Sciences - PNAS, 2013-05, Vol.110 (22), p.E2046-E2053

2013

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Automated benchmarking of peptide-MHC class I binding predictions

Bioinformatics, 2015-07, Vol.31 (13), p.2174-2181

2015

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Human Ebola virus infection results in substantial immune activation

Proceedings of the National Academy of Sciences - PNAS, 2015-04, Vol.112 (15), p.4719-4724

2015

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Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses

Nature communications, 2019-06, Vol.10 (1), p.2846-14, Article 2846

2019

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High levels of dd‐cfDNA identify patients with TCMR 1A and borderline allograft rejection at elevated risk of graft injury

American journal of transplantation, 2020-09, Vol.20 (9), p.2491-2498

2020

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Predicting HLA CD4 Immunogenicity in Human Populations

Frontiers in immunology, 2018-06, Vol.9, p.1369-1369

2018

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Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire

Proceedings of the National Academy of Sciences - PNAS, 2012-06, Vol.109 (25), p.9959-9964

2012

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Predicting population coverage of T-cell epitope-based diagnostics and vaccines

BMC bioinformatics, 2006-03, Vol.7 (1), p.153-153, Article 153

2006

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Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19

PLoS pathogens, 2021-09, Vol.17 (9), p.e1009842-e1009842

2021

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Mapping the MHC Class I-Spliced Immunopeptidome of Cancer Cells

Cancer immunology research, 2019-01, Vol.7 (1), p.62-76

2019

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Predicting T cell recognition of MHC class I restricted neoepitopes

Oncoimmunology, 2018-11, Vol.7 (11), p.e1492508-e1492508

2018

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A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

Peptide binding predictions for HLA DR, DP and DQ molecules

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

T cells in atherosclerosis

Are Ancient Durum Wheats Less Toxic to Celiac Patients? A Study of α-Gliadin from Graziella Ra and Kamut

Dengue virus infection elicits highly polarized CX3CR1⁺ cytotoxic CD4⁺ T cells associated with protective immunity

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

A large fraction of HLA class I ligands are proteasome-generated spliced peptides

Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

HLA class I supertypes: a revised and updated classification

Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity

Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia

NetMHCpan, a method for MHC class I binding prediction beyond humans

Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8⁺ T cells

Automated benchmarking of peptide-MHC class I binding predictions

Human Ebola virus infection results in substantial immune activation

Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses

High levels of dd‐cfDNA identify patients with TCMR 1A and borderline allograft rejection at elevated risk of graft injury

Predicting HLA CD4 Immunogenicity in Human Populations

Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire

Predicting population coverage of T-cell epitope-based diagnostics and vaccines

Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19

Mapping the MHC Class I-Spliced Immunopeptidome of Cancer Cells

Predicting T cell recognition of MHC class I restricted neoepitopes

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