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Integration of single-cell manipulation, whole transcriptome analysis, and image-based deep learning for studying “Singularity Biology”

Biophysics and Physicobiology, 2024, Vol.21(Supplemental), pp.e211005

Shiroguchi, Katsuyuki

2024

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Runx/Cbfβ complexes protect group 2 innate lymphoid cells from exhausted-like hyporesponsiveness during allergic airway inflammation

Nature communications, 2019-01, Vol.10 (1), p.447-13, Article 447

2019

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High-throughput identification and quantification of single bacterial cells in the microbiota

Nature communications, 2022-02, Vol.13 (1), p.863-863, Article 863

2022

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Osteoprotegerin-dependent M cell self-regulation balances gut infection and immunity

Nature communications, 2020-01, Vol.11 (1), p.234-16, Article 234

2020

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Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

Proceedings of the National Academy of Sciences - PNAS, 2012-01, Vol.109 (4), p.1347-1352

2012

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Identifying a Lung Stem Cell Subpopulation by Combining Single-Cell Morphometrics, Organoid Culture, and Transcriptomics

Stem cells (Dayton, Ohio), 2023-08, Vol.41 (8), p.809-820

2023

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Different cell imaging methods did not significantly improve immune cell image classification performance

PloS one, 2022-01, Vol.17 (1), p.e0262397-e0262397

2022

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Pigmentation level of human iPSC-derived RPE does not indicate a specific gene expression profile

eLife, 2024-05, Vol.12

2024

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The efficacy and further functional advantages of random-base molecular barcodes for absolute and digital quantification of nucleic acid molecules

Scientific reports, 2017-10, Vol.7 (1), p.13576-9, Article 13576

2017

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Mitochondrial reactive oxygen species trigger metformin-dependent antitumor immunity via activation of Nrf2/mTORC1/p62 axis in tumor-infiltrating CD8T lymphocytes

Journal for immunotherapy of cancer, 2021-09, Vol.9 (9), p.e002954

2021

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Cbfβ2 controls differentiation of and confers homing capacity to prethymic progenitors

The Journal of experimental medicine, 2018-02, Vol.215 (2), p.595-610

2018

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BSJ 2019 “Single-cell PRESTO” session

Biophysical reviews, 2020-04, Vol.12 (2), p.301-302

2020

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HaloTag-based conjugation of proteins to barcoding-oligonucleotides

Nucleic acids research, 2020-01, Vol.48 (2), p.e8-e8

2020

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Author Correction: Runx/Cbfβ complexes protect group 2 innate lymphoid cells from exhausted-like hyporesponsiveness during allergic airway inflammation

Nature communications, 2019-03, Vol.10 (1), p.1075-1075, Article 1075

2019

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Myosin V Walks by Lever Action and Brownian Motion

Science (American Association for the Advancement of Science), 2007-05, Vol.316 (5828), p.1208-1212

2007

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Cbfβ2 deficiency preserves Langerhans cell precursors by lack of selective TGFβ receptor signaling

The Journal of experimental medicine, 2017-10, Vol.214 (10), p.2933-2946

2017

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One-step micromolding of complex 3D microchambers for single-cell analysis

Lab on a chip, 2017-02, Vol.17 (4), p.647-652

2017

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Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo

Cell reports (Cambridge), 2020-07, Vol.32 (2), p.107887-107887, Article 107887

2020

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Prediction of Transcriptomic Phenotypes from Individual Cell Images

Seibutsu Butsuri, 2024, Vol.64(1), pp.35-37

SHIROGUCHI, Katsuyuki

2024

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Integration of single-cell manipulation, whole transcriptome analysis, and image-based deep learning for studying “Singularity Biology”

Biophysics and Physicobiology, 2024, pp.e211005

Shiroguchi, Katsuyuki

2024

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None of the Rotor Residues of F1-ATPase Are Essential for Torque Generation

Biophysical journal, 2014-05, Vol.106 (10), p.2166-2174

2014

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Mouse oocytes suppress miR-322-5p expression in ovarian granulosa cells

Journal of Reproduction and Development, 2016, Vol.62(4), pp.393-399

2016

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Genome‐wide study of mRNA degradation and transcript elongation in Escherichia coli

Molecular systems biology, 2015-05, Vol.11 (5), p.n/a

2015

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High-throughput identification and quantification of bacterial cells in the microbiota based on 16S rRNA sequencing with single-base accuracy using BarBIQ

Nature protocols, 2024-01, Vol.19 (1), p.207-239

2024

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Genome‐wide study of mRNA degradation and transcript elongation in Escherichia coli

Molecular systems biology, 2015-01, Vol.11 (1), p.781-n/a

2015

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Integration of single-cell manipulation, whole transcriptome analysis, and image-based deep learning for studying “Singularity Biology”

Runx/Cbfβ complexes protect group 2 innate lymphoid cells from exhausted-like hyporesponsiveness during allergic airway inflammation

High-throughput identification and quantification of single bacterial cells in the microbiota

Osteoprotegerin-dependent M cell self-regulation balances gut infection and immunity

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

Identifying a Lung Stem Cell Subpopulation by Combining Single-Cell Morphometrics, Organoid Culture, and Transcriptomics

Different cell imaging methods did not significantly improve immune cell image classification performance

Pigmentation level of human iPSC-derived RPE does not indicate a specific gene expression profile

The efficacy and further functional advantages of random-base molecular barcodes for absolute and digital quantification of nucleic acid molecules

Mitochondrial reactive oxygen species trigger metformin-dependent antitumor immunity via activation of Nrf2/mTORC1/p62 axis in tumor-infiltrating CD8T lymphocytes

Cbfβ2 controls differentiation of and confers homing capacity to prethymic progenitors

BSJ 2019 “Single-cell PRESTO” session

HaloTag-based conjugation of proteins to barcoding-oligonucleotides

Author Correction: Runx/Cbfβ complexes protect group 2 innate lymphoid cells from exhausted-like hyporesponsiveness during allergic airway inflammation

Myosin V Walks by Lever Action and Brownian Motion

Cbfβ2 deficiency preserves Langerhans cell precursors by lack of selective TGFβ receptor signaling

One-step micromolding of complex 3D microchambers for single-cell analysis

Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo

Prediction of Transcriptomic Phenotypes from Individual Cell Images

Integration of single-cell manipulation, whole transcriptome analysis, and image-based deep learning for studying “Singularity Biology”

None of the Rotor Residues of F1-ATPase Are Essential for Torque Generation

Mouse oocytes suppress miR-322-5p expression in ovarian granulosa cells

Genome‐wide study of mRNA degradation and transcript elongation in Escherichia coli

High-throughput identification and quantification of bacterial cells in the microbiota based on 16S rRNA sequencing with single-base accuracy using BarBIQ

Genome‐wide study of mRNA degradation and transcript elongation in Escherichia coli

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