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Proton Wire Dynamics in the Green Fluorescent Protein

Journal of chemical theory and computation, 2017-01, Vol.13 (1), p.353-369

2017

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Coarse-Grained Modeling of Multiple Pathways in Conformational Transitions of Multi-Domain Proteins

Journal of chemical information and modeling, 2021-05, Vol.61 (5), p.2427-2443

2021

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Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformations

The Journal of chemical physics, 2018-11, Vol.149 (19), p.195101-195101

2018

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The Hole in the Barrel: Water Exchange at the GFP Chromophore

The journal of physical chemistry. B, 2015-02, Vol.119 (8), p.3464-3478

2015

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evERdock BAI: Machine-learning-guided selection of protein-protein complex structure

The Journal of chemical physics, 2019-12, Vol.151 (21), p.215104-215104

2019

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Unraveling the Coupling between Conformational Changes and Ligand Binding in Ribose Binding Protein Using Multiscale Molecular Dynamics and Free-Energy Calculations

The journal of physical chemistry. B, 2021-03, Vol.125 (11), p.2898-2909

2021

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Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor

Scientific reports, 2019-08, Vol.9 (1), p.11216-16, Article 11216

2019

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Practical Protocols for Efficient Sampling of Kinase-Inhibitor Binding Pathways Using Two-Dimensional Replica-Exchange Molecular Dynamics

Frontiers in molecular biosciences, 2022-04, Vol.9, p.878830-878830

2022

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Building a macro-mixing dual‑basin Gō model using the Multistate Bennett Acceptance Ratio

Biophysics and Physicobiology, 2019, Vol.16, pp.310-321

2019

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Binding free energy landscape of c-Src kinase to its inhibitors sampled by molecular dynamics simulations: Effect of ligand size and flexibility

Biophysical journal, 2023-02, Vol.122 (3), p.37a-37a

2023

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Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch

Proceedings of the National Academy of Sciences - PNAS, 2024-04, Vol.121 (15), p.e2317197121

2024

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Mapping Proton Wires in Proteins: Carbonic Anhydrase and GFP Chromophore Biosynthesis

The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2009-07, Vol.113 (26), p.7253-7266

2009

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Building a Macro-mixing Dual-basin Go Model using the Multistate Bennett Acceptance Ratio

Biophysical journal, 2020-02, Vol.118 (3), p.179a-179a

2020

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Visualizing Proton Antenna in a High-Resolution Green Fluorescent Protein Structure

Journal of the American Chemical Society, 2010-08, Vol.132 (32), p.11093-11102

2010

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Bivalent Prefusion F Vaccine in Pregnancy to Prevent RSV Illness in Infants

The New England journal of medicine, 2023-04, Vol.388 (16), p.1451-1464

2023

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Efficacy and safety of bivalent RSVpreF maternal vaccination to prevent RSV illness in Japanese infants: Subset analysis from the pivotal randomized phase 3 MATISSE trial

Vaccine, 2024-09, Vol.42 (22), p.126041, Article 126041

2024

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First case of necrotizing fasciitis and bacteremia caused by Bifidobacterium breve

Anaerobe, 2022-08, Vol.76, p.102613, Article 102613

2022

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CXCR7 agonists inhibit the function of CXCL12 by down-regulation of CXCR4

Biochemical and biophysical research communications, 2013-02, Vol.431 (4), p.772-776

2013

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Young adult breast cancer patients have a poor prognosis independent of prognostic clinicopathological factors: a study from the Japanese Breast Cancer Registry

Breast cancer research and treatment, 2016-11, Vol.160 (1), p.163-172

2016

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Rice bran protein ameliorates diabetes, reduces fatty liver, and has renoprotective effects in Zucker Diabetic Fatty rats

Journal of functional foods, 2020-07, Vol.70, p.103981, Article 103981

2020

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Effects of bilateral cochlear implants in children: Timing of second surgery and the significance of wearing bilateral cochlear implants in Japan

Auris, nasus, larynx, 2020-06, Vol.47 (3), p.359-366

2020

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Patient characteristics associated with improvement in glycemic control following addition of an oral antidiabetic drug to DPP-4 inhibitor monotherapy in Japanese patients with type 2 diabetes mellitus (JDDM 60)

Diabetology international, 2022-01, Vol.13 (1), p.132-141

2022

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An Automatic Focal Period Detection Architecture for Lecture Archives

Artificial Intelligence in Education. Posters and Late Breaking Results, Workshops and Tutorials, Industry and Innovation Tracks, Practitioners’ and Doctoral Consortium, p.367-370

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Usefulness of an anesthetic mixture of medetomidine, midazolam, and butorphanol in cotton rats (Sigmodon hispidus)

The Japanese Journal of Veterinary Research, 2016-11, Vol.64 (4), p.273-276

2016

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8. Effect of Adsorption to Experimental System on Performance Evaluation of Amphipathic Adsorbent

Journal of UOEH, 2021-03, Vol.43 (1), p.134-134

2021

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Proton Wire Dynamics in the Green Fluorescent Protein

Coarse-Grained Modeling of Multiple Pathways in Conformational Transitions of Multi-Domain Proteins

Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformations

The Hole in the Barrel: Water Exchange at the GFP Chromophore

evERdock BAI: Machine-learning-guided selection of protein-protein complex structure

Unraveling the Coupling between Conformational Changes and Ligand Binding in Ribose Binding Protein Using Multiscale Molecular Dynamics and Free-Energy Calculations

Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor

Practical Protocols for Efficient Sampling of Kinase-Inhibitor Binding Pathways Using Two-Dimensional Replica-Exchange Molecular Dynamics

Building a macro-mixing dual‑basin Gō model using the Multistate Bennett Acceptance Ratio

Binding free energy landscape of c-Src kinase to its inhibitors sampled by molecular dynamics simulations: Effect of ligand size and flexibility

Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch

Mapping Proton Wires in Proteins: Carbonic Anhydrase and GFP Chromophore Biosynthesis

Building a Macro-mixing Dual-basin Go Model using the Multistate Bennett Acceptance Ratio

Visualizing Proton Antenna in a High-Resolution Green Fluorescent Protein Structure

Bivalent Prefusion F Vaccine in Pregnancy to Prevent RSV Illness in Infants

Efficacy and safety of bivalent RSVpreF maternal vaccination to prevent RSV illness in Japanese infants: Subset analysis from the pivotal randomized phase 3 MATISSE trial

First case of necrotizing fasciitis and bacteremia caused by Bifidobacterium breve

CXCR7 agonists inhibit the function of CXCL12 by down-regulation of CXCR4

Young adult breast cancer patients have a poor prognosis independent of prognostic clinicopathological factors: a study from the Japanese Breast Cancer Registry

Rice bran protein ameliorates diabetes, reduces fatty liver, and has renoprotective effects in Zucker Diabetic Fatty rats

Effects of bilateral cochlear implants in children: Timing of second surgery and the significance of wearing bilateral cochlear implants in Japan

Patient characteristics associated with improvement in glycemic control following addition of an oral antidiabetic drug to DPP-4 inhibitor monotherapy in Japanese patients with type 2 diabetes mellitus (JDDM 60)

An Automatic Focal Period Detection Architecture for Lecture Archives

Usefulness of an anesthetic mixture of medetomidine, midazolam, and butorphanol in cotton rats (Sigmodon hispidus)

8. Effect of Adsorption to Experimental System on Performance Evaluation of Amphipathic Adsorbent

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