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Combining a Base Deaminase Mutator with Phage-Assisted Evolution

Methods in molecular biology (Clifton, N.J.), 2024, Vol.2793, p.55

2024

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Boundaries of the origin of replication: creation of a pET-28a-derived vector with p15A copy control allowing compatible coexistence with pET vectors

PloS one, 2012-10, Vol.7 (10), p.e47259

2012

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The Intrinsically Disordered Loop in the USF1 bHLHZ Domain Modulates Its DNA-Binding Sequence Specificity in Hereditary Asthma

The journal of physical chemistry. B, 2019-11, Vol.123 (46), p.9862-9871

2019

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Combining Rational Design and Continuous Evolution on Minimalist Proteins That Target the E-box DNA Site

ACS chemical biology, 2021-01, Vol.16 (1), p.35-44

2021

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The DNA target determines the dimerization partner selected by bHLHZ-like hybrid proteins AhRJun and ArntFos

Molecular bioSystems, 2017-02, Vol.13 (3), p.476-488

2017

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Peptide therapeutics that directly target transcription factors

Peptide science (Hoboken, N.J.), 2019-01, Vol.111 (1), p.n/a

2019

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Yeast Populations Evolve to Resist CdSe Quantum Dot Toxicity

Bioconjugate chemistry, 2017-04, Vol.28 (4), p.1205-1213

2017

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Phage-Assisted Continuous Evolution (PACE): A Guide Focused on Evolving Protein–DNA Interactions

ACS omega, 2020-10, Vol.5 (42), p.26957-26966

2020

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The Role of Ligand Density and Size in Mediating Quantum Dot Nuclear Transport

Small (Weinheim an der Bergstrasse, Germany), 2014-10, Vol.10 (20), p.4182-4192

2014

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Crystal structure of the minimalist Max-E47 protein chimera

PloS one, 2012-02, Vol.7 (2), p.e32136-e32136

2012

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Enhancing the specificity of the enterokinase cleavage reaction to promote efficient cleavage of a fusion tag

Protein expression and purification, 2008-06, Vol.59 (2), p.314-319

2008

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Design of a single plasmid-based modified yeast one-hybrid system for investigation of in vivo protein-protein and protein-DNA interactions

BioTechniques, 2008-09, Vol.45 (3), p.295-304

2008

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AhR/Arnt:XRE interaction: Turning false negatives into true positives in the modified yeast one-hybrid assay

Analytical biochemistry, 2008-11, Vol.382 (2), p.101-106

2008

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Max-E47, a Designed Minimalist Protein That Targets the E-Box DNA Site in Vivo and in Vitro

Journal of the American Chemical Society, 2009-06, Vol.131 (22), p.7839-7848

2009

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Forced homodimerization of the c-Fos leucine zipper in designed bHLHZ-like hybrid proteins MaxbHLH-Fos and ArntbHLH-Fos

Molecular bioSystems, 2012-04, Vol.8 (4), p.1286-1296

2012

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Hybrids of the bHLH and bZIP protein motifs display different DNA-binding activities in vivo vs. in vitro

PloS one, 2008-10, Vol.3 (10), p.e3514-e3514

2008

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The bZIP Dimer Localizes at DNA Full-Sites Where Each Basic Region Can Alternately Translocate and Bind to Subsites at the Half-Site

Biochemistry (Easton), 2012-08, Vol.51 (33), p.6632-6643

2012

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FRep: A Fluorescent Protein-Based Bioprobe for in Vivo Detection of Protein–DNA Interactions

Analytical chemistry (Washington), 2011-12, Vol.83 (24), p.9643-9650

2011

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Guiding principles for a successful multidisciplinary research collaboration

Future science OA, 2015-11, Vol.1 (3), p.FSO7-FSO7

2015

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The GCN4 bZIP Targets Noncognate Gene Regulatory Sequences: Quantitative Investigation of Binding at Full and Half Sites

Biochemistry (Easton), 2007-02, Vol.46 (6), p.1663-1671

2007

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Reengineering natural design by rational design and in vivo library selection: the HLH subdomain in bHLHZ proteins is a unique requirement for DNA-binding function

Protein engineering, design and selection, 2010-05, Vol.23 (5), p.337-346

2010

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The bZIP Targets Overlapping DNA Subsites within a Half-Site, Resulting in Increased Binding Affinities

Biochemistry (Easton), 2008-09, Vol.47 (36), p.9646-9652

2008

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The GCN4 bZIP can bind to noncognate gene regulatory sequences

Biochimica et biophysica acta, 2006-07, Vol.1764 (7), p.1252-1259

2006

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The DNA target determines the dimerization partner selected by bHLHZ-like hybrid proteins AhRJun and ArntFosElectronic supplementary information (ESI) available: Plasmid construction details, table of primers, MY1H and MY2H, table of all in vivo yeast data, EMSA data and binding isotherms. See DOI: 10.1039/c6mb00795c

2017-02

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Minimalist proteins: Design of new molecular recognition scaffolds

Pure and applied chemistry, 2004-01, Vol.76 (7), p.1579-1590

Shin, J. A.

2004

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Combining a Base Deaminase Mutator with Phage-Assisted Evolution

Boundaries of the origin of replication: creation of a pET-28a-derived vector with p15A copy control allowing compatible coexistence with pET vectors

The Intrinsically Disordered Loop in the USF1 bHLHZ Domain Modulates Its DNA-Binding Sequence Specificity in Hereditary Asthma

Combining Rational Design and Continuous Evolution on Minimalist Proteins That Target the E-box DNA Site

The DNA target determines the dimerization partner selected by bHLHZ-like hybrid proteins AhRJun and ArntFos

Peptide therapeutics that directly target transcription factors

Yeast Populations Evolve to Resist CdSe Quantum Dot Toxicity

Phage-Assisted Continuous Evolution (PACE): A Guide Focused on Evolving Protein–DNA Interactions

The Role of Ligand Density and Size in Mediating Quantum Dot Nuclear Transport

Crystal structure of the minimalist Max-E47 protein chimera

Enhancing the specificity of the enterokinase cleavage reaction to promote efficient cleavage of a fusion tag

Design of a single plasmid-based modified yeast one-hybrid system for investigation of in vivo protein-protein and protein-DNA interactions

AhR/Arnt:XRE interaction: Turning false negatives into true positives in the modified yeast one-hybrid assay

Max-E47, a Designed Minimalist Protein That Targets the E-Box DNA Site in Vivo and in Vitro

Forced homodimerization of the c-Fos leucine zipper in designed bHLHZ-like hybrid proteins MaxbHLH-Fos and ArntbHLH-Fos

Hybrids of the bHLH and bZIP protein motifs display different DNA-binding activities in vivo vs. in vitro

The bZIP Dimer Localizes at DNA Full-Sites Where Each Basic Region Can Alternately Translocate and Bind to Subsites at the Half-Site

FRep: A Fluorescent Protein-Based Bioprobe for in Vivo Detection of Protein–DNA Interactions

Guiding principles for a successful multidisciplinary research collaboration

The GCN4 bZIP Targets Noncognate Gene Regulatory Sequences: Quantitative Investigation of Binding at Full and Half Sites

Reengineering natural design by rational design and in vivo library selection: the HLH subdomain in bHLHZ proteins is a unique requirement for DNA-binding function

The bZIP Targets Overlapping DNA Subsites within a Half-Site, Resulting in Increased Binding Affinities

The GCN4 bZIP can bind to noncognate gene regulatory sequences

Minimalist proteins: Design of new molecular recognition scaffolds

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