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Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

FEMS microbiology reviews, 2017-03, Vol.41 (2), p.182-199

2017

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Reducing bias in microbiome research: Comparing methods from sample collection to sequencing

Frontiers in microbiology, 2023-03, Vol.14, p.1094800-1094800

2023

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Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut

Frontiers in physiology, 2018-07, Vol.9, p.888-888

2018

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Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock

Frontiers in microbiology, 2016-01, Vol.6, p.1553-1553

2016

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Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population

Scientific reports, 2022-02, Vol.12 (1), p.1915-1915, Article 1915

2022

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Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives With Adult Celiac Disease Patients and Controls

Frontiers in microbiology, 2019-02, Vol.10, p.164-164

2019

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Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria

NPJ biofilms and microbiomes, 2022-04, Vol.8 (1), p.21-21, Article 21

2022

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Impact of long-term dietary habits on the human gut resistome in the Dutch population

Scientific reports, 2022-02, Vol.12 (1), p.1892-1892, Article 1892

2022

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Unveiling and harnessing the human gut microbiome in the rising burden of non-communicable diseases during urbanization

Gut microbes, 2023-12, Vol.15 (1), p.2237645-2237645

2023

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Frailty is related to serum inflammageing markers: results from the VITAL study

Immunity & ageing, 2023-11, Vol.20 (1), p.1-68, Article 68

2023

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Limited Bacterial Diversity within a Treatment Plant Receiving Antibiotic-Containing Waste from Bulk Drug Production

PloS one, 2016-11, Vol.11 (11), p.e0165914-e0165914

2016

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Microbiome data science

Journal of biosciences, 2019-10, Vol.44 (5), p.1-6, Article 115

2019

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Author Correction: Inter-species metabolic interactions in an in-vitro minimal human gut microbiome of core bacteria

NPJ biofilms and microbiomes, 2022-10, Vol.8 (1), p.76-76, Article 76

2022

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Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes

Microorganisms (Basel), 2020-08, Vol.8 (9), p.1275

2020

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An in vitro fermentation model to study the impact of bacteriophages targeting Shiga toxin-encoding Escherichia coli on the colonic microbiota

NPJ biofilms and microbiomes, 2022-09, Vol.8 (1), p.74-74, Article 74

2022

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Species-Specific Patterns of Gut Metabolic Modules in Dutch Individuals with Different Dietary Habits

mSphere, 2022-12, Vol.7 (6), p.e0051222-e0051222

2022

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Reconstructing functional networks in the human intestinal tract using synthetic microbiomes

Current opinion in biotechnology, 2019-08, Vol.58, p.146-154

2019

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Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties

The ISME Journal, 2022-09, Vol.16 (9), p.2144-2159

2022

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Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces

International journal of systematic and evolutionary microbiology, 2018-12, Vol.68 (12), p.3741-3746

2018

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Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes

Microorganisms (Basel), 2020-05, Vol.8 (5), p.665

2020

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Unravelling lactate‐acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics

Environmental microbiology, 2020-11, Vol.22 (11), p.4863-4875

2020

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A tiny fraction of all species forms most of nature: Rarity as a sticky state

Proceedings of the National Academy of Sciences - PNAS, 2024-01, Vol.121 (2), p.e2221791120

2024

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An Inducible Operon Is Involved in Inulin Utilization in Lactobacillus plantarum Strains, as Revealed by Comparative Proteogenomics and Metabolic Profiling

Applied and environmental microbiology, 2017-01, Vol.83 (2), p.E02402

2017

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Modulation of human intestinal microbiota in a clinical trial by consumption of a β-d-glucan-enriched extract obtained from Lentinula edodes

European journal of nutrition, 2021-09, Vol.60 (6), p.3249-3265

2021

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Pre‐vaccination immunotypes reveal weak and robust antibody responders to influenza vaccination

Aging cell, 2024-02, Vol.23 (2), p.e14048-n/a

2024

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Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

Reducing bias in microbiome research: Comparing methods from sample collection to sequencing

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut

Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock

Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population

Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives With Adult Celiac Disease Patients and Controls

Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria

Impact of long-term dietary habits on the human gut resistome in the Dutch population

Unveiling and harnessing the human gut microbiome in the rising burden of non-communicable diseases during urbanization

Frailty is related to serum inflammageing markers: results from the VITAL study

Limited Bacterial Diversity within a Treatment Plant Receiving Antibiotic-Containing Waste from Bulk Drug Production

Microbiome data science

Author Correction: Inter-species metabolic interactions in an in-vitro minimal human gut microbiome of core bacteria

Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes

An in vitro fermentation model to study the impact of bacteriophages targeting Shiga toxin-encoding Escherichia coli on the colonic microbiota

Species-Specific Patterns of Gut Metabolic Modules in Dutch Individuals with Different Dietary Habits

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes

Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties

Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces

Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes

Unravelling lactate‐acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics

A tiny fraction of all species forms most of nature: Rarity as a sticky state

An Inducible Operon Is Involved in Inulin Utilization in Lactobacillus plantarum Strains, as Revealed by Comparative Proteogenomics and Metabolic Profiling

Modulation of human intestinal microbiota in a clinical trial by consumption of a β-d-glucan-enriched extract obtained from Lentinula edodes

Pre‐vaccination immunotypes reveal weak and robust antibody responders to influenza vaccination

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