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Why do we need so many chemical similarity search methods?

Drug Discovery Today, 2002-09, Vol.7 (17), p.903-911

2002

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SQ: A Program for Rapidly Producing Pharmacophorically Relevent Molecular Superpositions

Journal of medicinal chemistry, 1999-05, Vol.42 (9), p.1505-1514

1999

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QSAR without borders

Chemical Society reviews, 2020-06, Vol.49 (11), p.3525-3564

2020

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ROLE OF ULTRAVIOLET RADIATION IN MAINTAINING THE THREE-DIMENSIONAL STRUCTURE OF A CYANOBACTERIAL MAT COMMUNITY AND FACILITATING NITROGEN FIXATION

Journal of phycology, 2001-10, Vol.37 (5), p.731-737

Sheridan, Richard P.

2001

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Latent Semantic Structure Indexing (LaSSI) for Defining Chemical Similarity

Journal of medicinal chemistry, 2001-04, Vol.44 (8), p.1177-1184

2001

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Chemical Similarity Searches Using Latent Semantic Structural Indexing (LaSSI) and Comparison to TOPOSIM

Journal of medicinal chemistry, 2001-04, Vol.44 (8), p.1185-1191

2001

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Mining the Chemical Quarry with Joint Chemical Probes: An Application of Latent Semantic Structure Indexing (LaSSI) and TOPOSIM (Dice) to Chemical Database Mining

Journal of medicinal chemistry, 2001-05, Vol.44 (10), p.1564-1575

2001

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A Model for Predicting Likely Sites of CYP3A4-mediated Metabolism on Drug-like Molecules

Journal of medicinal chemistry, 2003-04, Vol.46 (8), p.1330-1336

2003

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The ensemble approach to distance geometry: application to the nicotinic pharmacophore

Journal of medicinal chemistry, 1986-06, Vol.29 (6), p.899-906

1986

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Docking flexible ligands to macromolecular receptors by molecular shape

Journal of medicinal chemistry, 1986-11, Vol.29 (11), p.2149-2153

1986

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The Most Common Chemical Replacements in Drug-Like Compounds

Journal of Chemical Information and Computer Sciences, 2002-01, Vol.42 (1), p.103-108

Sheridan, Robert P

2002

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Searching for Pharmacophores in Large Coordinate Data Bases and Its Use in Drug Design

Proceedings of the National Academy of Sciences - PNAS, 1989-10, Vol.86 (20), p.8165-8169

1989

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Epicaulous, nitrogen-fixing microepiphytes in a tropical mangal community, Guadeloupe, French West Indies

Biotropica, 1991-12, Vol.23 (4), p.530-541

Sheridan, Richard P.

1991

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Using shape complementarity as an initial screen in designing ligands for a receptor binding site of known three-dimensional structure

Journal of medicinal chemistry, 1988-04, Vol.31 (4), p.722-729

1988

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A systematic search for protein signature sequences

Proteins, structure, function, and bioinformatics, 1992-09, Vol.14 (1), p.16-28

1992

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α -helix Dipole Model and Electrostatic Stabilization of 4-α -helical Proteins

Proceedings of the National Academy of Sciences - PNAS, 1982-08, Vol.79 (15), p.4545-4549

1982

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Origin of tetracycline efflux proteins: conclusions from nucleotide sequence analysis

Molecular microbiology, 1991-04, Vol.5 (4), p.895-900

1991

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Nitrogenase activity by Hapalosiphon flexuosus associated with Sphagnum erythrocalyx mats in the cloud forest on the volcano La Soufriere, Guadeloupe, French West Indies

Biotropica, 1991-06, Vol.23 (2), p.134-140

Sheridan, R.P. (University of Montana, Missoula, MT)

1991

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Protocols for Bridging the Peptide to Nonpeptide Gap in Topological Similarity Searches

Journal of Chemical Information and Computer Sciences, 2001-09, Vol.41 (5), p.1395-1406

2001

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Designing targeted libraries with genetic algorithms

Journal of molecular graphics & modelling, 2000-08, Vol.18 (4-5), p.320-334

2000

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Similarity to Molecules in the Training Set Is a Good Discriminator for Prediction Accuracy in QSAR

Journal of Chemical Information and Computer Sciences, 2004-11, Vol.44 (6), p.1912-1928

2004

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Hydrogen Peroxide Formation and Decay in Iron-rich Geothermal Waters: The Relative Roles of Abiotic and Biotic Mechanisms

Photochemistry and photobiology, 2000-06, Vol.71 (6), p.691-699

2000

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Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling

Journal of Chemical Information and Computer Sciences, 2003-11, Vol.43 (6), p.1947-1958

2003

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Boosting: An Ensemble Learning Tool for Compound Classification and QSAR Modeling

Journal of chemical information and modeling, 2005-05, Vol.45 (3), p.786-799

2005

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Role of lysine-54 in determining cofactor specificity and binding in human dihydrofolate reductase

Biochemistry (Easton), 1990-09, Vol.29 (35), p.8063-8069

1990

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Why do we need so many chemical similarity search methods?

SQ: A Program for Rapidly Producing Pharmacophorically Relevent Molecular Superpositions

QSAR without borders

ROLE OF ULTRAVIOLET RADIATION IN MAINTAINING THE THREE-DIMENSIONAL STRUCTURE OF A CYANOBACTERIAL MAT COMMUNITY AND FACILITATING NITROGEN FIXATION

Latent Semantic Structure Indexing (LaSSI) for Defining Chemical Similarity

Chemical Similarity Searches Using Latent Semantic Structural Indexing (LaSSI) and Comparison to TOPOSIM

Mining the Chemical Quarry with Joint Chemical Probes: An Application of Latent Semantic Structure Indexing (LaSSI) and TOPOSIM (Dice) to Chemical Database Mining

A Model for Predicting Likely Sites of CYP3A4-mediated Metabolism on Drug-like Molecules

The ensemble approach to distance geometry: application to the nicotinic pharmacophore

Docking flexible ligands to macromolecular receptors by molecular shape

The Most Common Chemical Replacements in Drug-Like Compounds

Searching for Pharmacophores in Large Coordinate Data Bases and Its Use in Drug Design

Epicaulous, nitrogen-fixing microepiphytes in a tropical mangal community, Guadeloupe, French West Indies

Using shape complementarity as an initial screen in designing ligands for a receptor binding site of known three-dimensional structure

A systematic search for protein signature sequences

α -helix Dipole Model and Electrostatic Stabilization of 4-α -helical Proteins

Origin of tetracycline efflux proteins: conclusions from nucleotide sequence analysis

Nitrogenase activity by Hapalosiphon flexuosus associated with Sphagnum erythrocalyx mats in the cloud forest on the volcano La Soufriere, Guadeloupe, French West Indies

Protocols for Bridging the Peptide to Nonpeptide Gap in Topological Similarity Searches

Designing targeted libraries with genetic algorithms

Similarity to Molecules in the Training Set Is a Good Discriminator for Prediction Accuracy in QSAR

Hydrogen Peroxide Formation and Decay in Iron-rich Geothermal Waters: The Relative Roles of Abiotic and Biotic Mechanisms

Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling

Boosting: An Ensemble Learning Tool for Compound Classification and QSAR Modeling

Role of lysine-54 in determining cofactor specificity and binding in human dihydrofolate reductase

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