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Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution

mBio, 2018-03, Vol.9 (2)

2018

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Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract

PloS one, 2020-06, Vol.15 (6), p.e0234159-e0234159

2020

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Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies

PeerJ (San Francisco, CA), 2021-08, Vol.9, p.e11950-e11950, Article e11950

2021

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Batf3+ DCs and the 4-1BB/4-1BBL axis are required at the effector phase in the tumor microenvironment for PD-1/PD-L1 blockade efficacy

Cell reports (Cambridge), 2024-05, Vol.43 (5), p.114141-114141, Article 114141

2024

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Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome

PloS one, 2016-11, Vol.11 (11), p.e0166757-e0166757

2016

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Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality

mSphere, 2020-08, Vol.5 (4)

2020

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Evolution of parasitism and mutualism between filamentous phage M13 and Escherichia coli

PeerJ (San Francisco, CA), 2016-05, Vol.4, p.e2060-e2060, Article e2060

2016

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Evolution of mutualism from parasitism in experimental virus populations

Evolution, 2018-03, Vol.72 (3), p.707-712

2018

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Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges

Evolutionary Bioinformatics, 2016-06, Vol.2016 (S1), p.25-33

2016

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Checkpoint Blockade-Induced Dermatitis and Colitis Are Dominated by Tissue-Resident Memory T Cells and Th1/Tc1 Cytokines

Cancer immunology research, 2022-10, Vol.10 (10), p.1167-1174

2022

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Adding biotic complexity alters the metabolic benefits of mutualism

Evolution, 2016-08, Vol.70 (8), p.1871-1881

2016

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UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales

Virus evolution, 2020-01, Vol.6 (1), p.veaa030-veaa030

2020

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The impact of transmission mode on the evolution of benefits provided by microbial symbionts

Ecology and evolution, 2014-09, Vol.4 (17), p.3350-3361

2014

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Abstract IA20: Checkpoint blockade–induced dermatitis and colitis are dominated by tissue-resident memory T cells and Th1/Tc1 cytokines

Cancer immunology research, 2022-12, Vol.10 (12_Supplement), p.IA20-IA20

2022

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Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality

mSphere, 2020-08, Vol.5 (4)

2020

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Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges

Evolutionary bioinformatics online, 2016-06, Vol.2016 (Suppl. 1), p.25-33

2016

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Coevolution along a parasitism-mutualism continuum: Theory and experiments with phage and bacteria

Shapiro, Jason W

2014

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Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges: Supplementary Issue: Bioinformatics Methods and Applications for Big Metagenomics Data

Evolutionary Bioinformatics, 2016, Vol.12s1

2016

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Handbook of Social Psychology

Second edition, 2013

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A Randomized Trial of Protocol-Based Care for Early Septic Shock

The New England journal of medicine, 2014-05, Vol.370 (18), p.1683-1693

2014

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Sepsis Subclasses: A Framework for Development and Interpretation

Critical care medicine, 2021-05, Vol.49 (5), p.748-759

2021

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Sirtuin 2 regulates cellular iron homeostasis via deacetylation of transcription factor NRF2

The Journal of clinical investigation, 2017-04, Vol.127 (4), p.1505-1516

2017

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Deep Learning Algorithm for Automated Cardiac Murmur Detection via a Digital Stethoscope Platform

Journal of the American Heart Association, 2021-05, Vol.10 (9), p.e019905

2021

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Identification of a hyperinflammatory sepsis phenotype using protein biomarker and clinical data in the ProCESS randomized trial

Scientific reports, 2024-03, Vol.14 (1), p.6234-8, Article 6234

2024

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Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution

Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract

Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies

Batf3+ DCs and the 4-1BB/4-1BBL axis are required at the effector phase in the tumor microenvironment for PD-1/PD-L1 blockade efficacy

Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms

Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome

Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality

Evolution of parasitism and mutualism between filamentous phage M13 and Escherichia coli

Evolution of mutualism from parasitism in experimental virus populations

Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges

Checkpoint Blockade-Induced Dermatitis and Colitis Are Dominated by Tissue-Resident Memory T Cells and Th1/Tc1 Cytokines

Adding biotic complexity alters the metabolic benefits of mutualism

UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales

The impact of transmission mode on the evolution of benefits provided by microbial symbionts

Abstract IA20: Checkpoint blockade–induced dermatitis and colitis are dominated by tissue-resident memory T cells and Th1/Tc1 cytokines

Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality

Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges

Coevolution along a parasitism-mutualism continuum: Theory and experiments with phage and bacteria

Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges: Supplementary Issue: Bioinformatics Methods and Applications for Big Metagenomics Data

Handbook of Social Psychology

A Randomized Trial of Protocol-Based Care for Early Septic Shock

Sepsis Subclasses: A Framework for Development and Interpretation

Sirtuin 2 regulates cellular iron homeostasis via deacetylation of transcription factor NRF2

Deep Learning Algorithm for Automated Cardiac Murmur Detection via a Digital Stethoscope Platform

Identification of a hyperinflammatory sepsis phenotype using protein biomarker and clinical data in the ProCESS randomized trial

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