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An experimental design framework for Markovian gene regulatory networks under stationary control policy

BMC systems biology, 2018-12, Vol.12 (Suppl 8), p.137-137, Article 137

2018

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Effect of separate sampling on classification accuracy

Bioinformatics, 2014-01, Vol.30 (2), p.242-250

2014

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Classifier design given an uncertainty class of feature distributions via regularized maximum likelihood and the incorporation of biological pathway knowledge in steady-state phenotype classification

Pattern recognition, 2013-10, Vol.46 (10), p.2783-2797

2013

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Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma

Journal of clinical oncology, 2018-10, Vol.36 (28), p.2845-2853

2018

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Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification

IEEE/ACM transactions on computational biology and bioinformatics, 2019-03, Vol.16 (2), p.524-537

2019

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Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors

BMC bioinformatics, 2017-12, Vol.18 (Suppl 14), p.552-552, Article 552

2017

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Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA

Science translational medicine, 2016-11, Vol.8 (364), p.364ra155

2016

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Evaluating upfront high-dose consolidation after R-CHOP for follicular lymphoma by clinical and genetic risk models

Blood advances, 2020-09, Vol.4 (18), p.4451-4462

2020

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Short Diagnosis-to-Treatment Interval Is Associated With Higher Circulating Tumor DNA Levels in Diffuse Large B-Cell Lymphoma

Journal of clinical oncology, 2021-08, Vol.39 (23), p.JCO2002573-2616

2021

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Distinct Hodgkin lymphoma subtypes defined by noninvasive genomic profiling

Nature (London), 2024-01, Vol.625 (7996), p.778-787

2024

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Intrinsically Bayesian Robust Kalman Filter: An Innovation Process Approach

IEEE transactions on signal processing, 2017-05, Vol.65 (10), p.2531-2546

2017

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Optimal Bayesian Kalman Filtering With Prior Update

IEEE transactions on signal processing, 2018-04, Vol.66 (8), p.1982-1996

2018

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Inferring gene expression from cell-free DNA fragmentation profiles

Nature biotechnology, 2022-04, Vol.40 (4), p.585-597

2022

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Discrete optimal Bayesian classification with error-conditioned sequential sampling

Pattern recognition, 2015-11, Vol.48 (11), p.3766-3782

2015

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Accurate Detection of Clinically Actionable Copy Number Variants in Diverse Hematological Neoplasms By Routine Targeted Sequencing: A Comparative Performance Study

Blood, 2022-11, Vol.140 (Supplement 1), p.10712-10713

2022

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Incorporation of Biological Pathway Knowledge in the Construction of Priors for Optimal Bayesian Classification

IEEE/ACM transactions on computational biology and bioinformatics, 2014-01, Vol.11 (1), p.202-218

2014

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An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification

IEEE/ACM transactions on computational biology and bioinformatics, 2015-11, Vol.12 (6), p.1304-1321

2015

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Noninvasive Cell-of-Origin Classification of Diffuse Large B-Cell Lymphoma Using Inferred Gene Expression from Cell-Free DNA Sequencing

Blood, 2021-11, Vol.138 (Supplement 1), p.37-37

2021

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Abstract 3388: Chromatin accessibility patterns in cell-free DNA reveal tumor heterogeneity

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.3388-3388

2020

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An experimental design framework for Markovian gene regulatory networks under stationary control policy

Effect of separate sampling on classification accuracy

Classifier design given an uncertainty class of feature distributions via regularized maximum likelihood and the incorporation of biological pathway knowledge in steady-state phenotype classification

Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma

Early Detection of Molecular Residual Disease in Localized Lung Cancer by Circulating Tumor DNA Profiling

Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification

Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors

Determinants of resistance to engineered T cell therapies targeting CD19 in large B cell lymphomas

Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA

Evaluating upfront high-dose consolidation after R-CHOP for follicular lymphoma by clinical and genetic risk models

Short Diagnosis-to-Treatment Interval Is Associated With Higher Circulating Tumor DNA Levels in Diffuse Large B-Cell Lymphoma

Distinct Hodgkin lymphoma subtypes defined by noninvasive genomic profiling

Intrinsically Bayesian Robust Kalman Filter: An Innovation Process Approach

Optimal Bayesian Kalman Filtering With Prior Update

Inferring gene expression from cell-free DNA fragmentation profiles

Discrete optimal Bayesian classification with error-conditioned sequential sampling

Accurate Detection of Clinically Actionable Copy Number Variants in Diverse Hematological Neoplasms By Routine Targeted Sequencing: A Comparative Performance Study

Incorporation of Biological Pathway Knowledge in the Construction of Priors for Optimal Bayesian Classification

An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification

Noninvasive Cell-of-Origin Classification of Diffuse Large B-Cell Lymphoma Using Inferred Gene Expression from Cell-Free DNA Sequencing

Abstract 3388: Chromatin accessibility patterns in cell-free DNA reveal tumor heterogeneity

Distinct Molecular Subtypes of Classic Hodgkin Lymphoma Identified By Comprehensive Noninvasive Profiling

Profiling of Circulating Tumor DNA for Noninvasive Disease Detection, Risk Stratification, and MRD Monitoring in Patients with CNS Lymphoma

Higher Rates of Severe Infection and Persistent Cytopenias in Long-Term CAR19 Responders Than after Autologous HCT: A Single Institution Study of 139 Subjects

Determinants of Resistance to Engineered T-Cell Therapies Targeting CD19 in Large B-Cell Lymphomas

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