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Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

Nature (London), 2015-05, Vol.521 (7551), p.208-212

2015

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Twelve previously unknown phage genera are ubiquitous in global oceans

Proceedings of the National Academy of Sciences - PNAS, 2013-07, Vol.110 (31), p.12798-12803

2013

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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

PloS one, 2012-11, Vol.7 (11), p.e49138-e49138

2012

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Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models

Genome Biology, 2020-12, Vol.21 (1), p.304-26, Article 304

2020

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Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (19), p.7148-7149

2012

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Evaluating the performance of random forest and iterative random forest based methods when applied to gene expression data

Computational and structural biotechnology journal, 2022-01, Vol.20 (na), p.3372-3386

2022

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Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

The ISME Journal, 2011-05, Vol.5 (5), p.856-865

2011

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Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site

Proteomics (Weinheim), 2013-10, Vol.13 (18-19), p.2921-2930

2013

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Shotgun metaproteomics of the human distal gut microbiota

The ISME Journal, 2009-02, Vol.3 (2), p.179-189

2009

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Insights into the Structure and Metabolic Function of Microbes That Shape Pelagic Iron-Rich Aggregates (“Iron Snow”)

Applied and Environmental Microbiology, 2013-07, Vol.79 (14), p.4272-4281

2013

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Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus

PloS one, 2012-05, Vol.7 (5), p.e38077-e38077

2012

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Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

Journal of proteome research, 2010-12, Vol.9 (12), p.6615-6622

2010

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Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities

Applied and Environmental Microbiology, 2012-12, Vol.78 (23), p.8321-8330

2012

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Use of Label-Free Quantitative Proteomics To Distinguish the Secreted Cellulolytic Systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis

Applied and Environmental Microbiology, 2011-06, Vol.77 (12), p.4042-4054

2011

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New Group in the Leptospirillum Clade: Cultivation-Independent Community Genomics, Proteomics, and Transcriptomics of the New Species “Leptospirillum Group IV UBA BS”

Applied and Environmental Microbiology, 2013-09, Vol.79 (17), p.5384-5393

2013

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Molecular Dynamics of the Shewanella oneidensis Response to Chromate Stress

Molecular & cellular proteomics, 2006-06, Vol.5 (6), p.1054-1071

2006

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Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid Mine Drainage Biofilms

Applied and Environmental Microbiology, 2009-07, Vol.75 (13), p.4599-4615

2009

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Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses

The ISME Journal, 2012-02, Vol.6 (2), p.410-421

2012

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Coupling a Detergent Lysis/Cleanup Methodology with Intact Protein Fractionation for Enhanced Proteome Characterization

Journal of proteome research, 2012-12, Vol.11 (12), p.6008-6018

2012

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Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation

Applied and Environmental Microbiology, 2009-10, Vol.75 (20), p.6591-6599

2009

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Community Proteomics of a Natural Microbial Biofilm

Science (American Association for the Advancement of Science), 2005-06, Vol.308 (5730), p.1915-1920

2005

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Identification of Biofilm Matrix-Associated Proteins from an Acid Mine Drainage Microbial Community

Applied and Environmental Microbiology, 2011-08, Vol.77 (15), p.5230-5237

2011

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Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2452, p.317

2022

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Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Frontiers in genetics, 2019-05, Vol.10 (N/a), p.487-487

2019

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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches

Genome research, 2011-04, Vol.21 (4), p.634-641

2011

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Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

Twelve previously unknown phage genera are ubiquitous in global oceans

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

Evaluating the performance of random forest and iterative random forest based methods when applied to gene expression data

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site

Shotgun metaproteomics of the human distal gut microbiota

Insights into the Structure and Metabolic Function of Microbes That Shape Pelagic Iron-Rich Aggregates (“Iron Snow”)

Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities

Use of Label-Free Quantitative Proteomics To Distinguish the Secreted Cellulolytic Systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis

New Group in the Leptospirillum Clade: Cultivation-Independent Community Genomics, Proteomics, and Transcriptomics of the New Species “Leptospirillum Group IV UBA BS”

Molecular Dynamics of the Shewanella oneidensis Response to Chromate Stress

Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid Mine Drainage Biofilms

Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses

Coupling a Detergent Lysis/Cleanup Methodology with Intact Protein Fractionation for Enhanced Proteome Characterization

Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation

Community Proteomics of a Natural Microbial Biofilm

Identification of Biofilm Matrix-Associated Proteins from an Acid Mine Drainage Microbial Community

Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches

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