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Characterization of cell fate probabilities in single-cell data with Palantir

Nature biotechnology, 2019-04, Vol.37 (4), p.451-460

2019

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Regenerative lineages and immune-mediated pruning in lung cancer metastasis

Nature medicine, 2020-02, Vol.26 (2), p.259-269

2020

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The emergent landscape of the mouse gut endoderm at single-cell resolution

Nature (London), 2019-05, Vol.569 (7756), p.361-367

2019

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Fully defined human pluripotent stem cell-derived microglia and tri-culture system model C3 production in Alzheimer's disease

Nature neuroscience, 2021-03, Vol.24 (3), p.343

2021

Volltextzugriff (PDF)

CSF-1R inhibition alters macrophage polarization and blocks glioma progression

Nature medicine, 2013-10, Vol.19 (10), p.1264-1272

2013

Volltextzugriff (PDF)

SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps

PLoS computational biology, 2015-05, Vol.11 (5), p.e1004271-e1004271

2015

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CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells

Genome Biology, 2022-03, Vol.23 (1), p.81-81, Article 81

2022

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Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation

Nature genetics, 2015-11, Vol.47 (11), p.1249-1259

2015

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Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages

Cell, 2020-10, Vol.183 (3), p.702-716.e14

2020

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BCL6 positively regulates AID and germinal center gene expression via repression of miR-155

The Journal of experimental medicine, 2012-12, Vol.209 (13), p.2455-2465

2012

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microRNA 28 controls cell proliferation and is down-regulated in B-cell lymphomas

Proceedings of the National Academy of Sciences - PNAS, 2014-06, Vol.111 (22), p.8185-8190

2014

Volltextzugriff (PDF)

DUX4 expression in cancer induces a metastable early embryonic totipotent program

Cell reports (Cambridge), 2023-09, Vol.42 (9), p.113114-113114, Article 113114

2023

Volltextzugriff (PDF)

Tissue Schematics: A framework to decipher tissue architecture and assembly

Cell systems, 2022-02, Vol.13 (2), p.107-108

Setty, Manu

2022

Volltextzugriff (PDF)

Identification of global alteration of translational regulation in glioma in vivo

PloS one, 2012-10, Vol.7 (10), p.e46965

2012

Volltextzugriff (PDF)

HLA type inference via haplotypes identical by descent

Journal of computational biology, 2011-03, Vol.18 (3), p.483

2011

Volltextzugriff (PDF)

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

Cell, 2018-08, Vol.174 (5), p.1293-1308.e36

2018

Volltextzugriff (PDF)

Wishbone identifies bifurcating developmental trajectories from single-cell data

Nature biotechnology, 2016-06, Vol.34 (6), p.637-645

2016

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Integrating Multiple Layers of Genomic Data to Identify Regulatory Programs of Gene Expression in KRAS Mutant Rectal Cancers

Journal of the American College of Surgeons, 2014-09, Vol.219 (3), p.S21-S22

2014

Volltextzugriff (PDF)

Signals that control MAIT cell function in healthy and inflamed human tissues

Immunological reviews, 2024-05, Vol.323 (1), p.138-149

2024

Volltextzugriff (PDF)

Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells

Immunity (Cambridge, Mass.), 2018-05, Vol.48 (5), p.1029-1045.e5

2018

Volltextzugriff (PDF)

Lineage plasticity in prostate cancer depends on JAK/STAT inflammatory signaling

Science (American Association for the Advancement of Science), 2022-09, Vol.377 (6611), p.1180-1191

2022

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SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data

Nature biotechnology, 2023-12, Vol.41 (12), p.1746-1757

2023

Volltextzugriff (PDF)

SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps: e1004271

PLoS computational biology, 2015-05, Vol.11 (5)

2015

Volltextzugriff (PDF)

Negative Co-stimulation Constrains T Cell Differentiation by Imposing Boundaries on Possible Cell States

Immunity (Cambridge, Mass.), 2019-04, Vol.50 (4), p.1084-1098.e10

2019

Volltextzugriff (PDF)

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Characterization of cell fate probabilities in single-cell data with Palantir

Regenerative lineages and immune-mediated pruning in lung cancer metastasis

The emergent landscape of the mouse gut endoderm at single-cell resolution

Fully defined human pluripotent stem cell-derived microglia and tri-culture system model C3 production in Alzheimer's disease

CSF-1R inhibition alters macrophage polarization and blocks glioma progression

SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps

CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells

Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation

Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages

BCL6 positively regulates AID and germinal center gene expression via repression of miR-155

microRNA 28 controls cell proliferation and is down-regulated in B-cell lymphomas

Defining cellular population dynamics at single-cell resolution during prostate cancer progression

DUX4 expression in cancer induces a metastable early embryonic totipotent program

Tissue Schematics: A framework to decipher tissue architecture and assembly

Identification of global alteration of translational regulation in glioma in vivo

HLA type inference via haplotypes identical by descent

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

Wishbone identifies bifurcating developmental trajectories from single-cell data

Integrating Multiple Layers of Genomic Data to Identify Regulatory Programs of Gene Expression in KRAS Mutant Rectal Cancers

Signals that control MAIT cell function in healthy and inflamed human tissues

Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells

Lineage plasticity in prostate cancer depends on JAK/STAT inflammatory signaling

SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data

SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps: e1004271

Negative Co-stimulation Constrains T Cell Differentiation by Imposing Boundaries on Possible Cell States

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