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Evidence of non-random mutation rates suggests an evolutionary risk management strategy

Nature (London), 2012-05, Vol.485 (7396), p.95-98

2012

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Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

Nucleic acids research, 2011-03, Vol.39 (6), p.2073-2091

2011

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Genome scale patterns of supercoiling in a bacterial chromosome

Nature communications, 2016-03, Vol.7 (1), p.11055-11055, Article 11055

2016

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Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

Nucleic acids research, 2012-04, Vol.40 (8), p.3524-3537

2012

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Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription

Nature communications, 2012-06, Vol.3 (1), p.886-886, Article 886

2012

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Dynamics of genetic variation in transcription factors and its implications for the evolution of regulatory networks in Bacteria

Nucleic acids research, 2020-05, Vol.48 (8), p.4100-4114

2020

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Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity

Nucleic acids research, 2010-10, Vol.38 (18), p.5970-5981

2010

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Targeting redox heterogeneity to counteract drug tolerance in replicating Mycobacterium tuberculosis

Science translational medicine, 2019-11, Vol.11 (518)

2019

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Restriction modification systems as engines of diversity

Frontiers in microbiology, 2015-06, Vol.6, p.528-528

2015

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Emergence of networks of shared restriction-modification systems in phage–bacteria ecosystems

Journal of biosciences, 2022-09, Vol.47 (3), Article 38

2022

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Genome-scale reconstruction of Gcn4/ATF4 networks driving a growth program

PLoS genetics, 2020-12, Vol.16 (12), p.e1009252-e1009252

2020

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Transcriptional regulatory networks in bacteria: from input signals to output responses

Current opinion in microbiology, 2006-10, Vol.9 (5), p.511-519

2006

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Principles of transcriptional regulation and evolution of the metabolic system in E. coli

Genome Research, 2009-01, Vol.19 (1), p.79-91

2009

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The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli

Nucleic acids research, 2015-01, Vol.43 (1), p.295-308

2015

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A Mutant RNA Polymerase Activates the General Stress Response, Enabling Escherichia coli Adaptation to Late Prolonged Stationary Phase

mSphere, 2020-04, Vol.5 (2)

2020

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Global pleiotropic effects in adaptively evolved Escherichia coli lacking CRP reveal molecular mechanisms that define the growth physiology

Open biology, 2022-02, Vol.12 (2), p.210206-210206

2022

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Early fate of exogenous promoters in E. coli

Nucleic acids research, 2020-03, Vol.48 (5), p.2348-2356

2020

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Complete Genome Sequence of Uropathogenic Proteus mirabilis, a Master of both Adherence and Motility

Journal of Bacteriology, 2008-06, Vol.190 (11), p.4027-4037

2008

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Understanding the Genome-Wide Transcription Response To Various cAMP Levels in Bacteria Using Phenomenological Models

mSystems, 2022-12, Vol.7 (6), p.e0090022

2022

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Inhibition of factor-dependent transcription termination in Escherichia coli might relieve xenogene silencing by abrogating H-NS-DNA interactions in vivo

Journal of biosciences, 2014-03, Vol.39 (1), p.53-61

2014

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Redox-dependent condensation of the mycobacterial nucleoid by WhiB4

Redox biology, 2018-10, Vol.19, p.116-133

2018

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Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase

mSphere, 2017-05, Vol.2 (3)

2017

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Reply to Jobling, "Ectopic Expression of the ydaS and ydaT Genes of the Cryptic Prophage Rac of Escherichia coli K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function"

mSphere, 2018-04, Vol.3 (2)

2018

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Laboratory Evolution Experiments Help Identify a Predominant Region of Constitutive Stable DNA Replication Initiation

mSphere, 2020-02, Vol.5 (1)

2020

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Evidence of non-random mutation rates suggests an evolutionary risk management strategy

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

Genome scale patterns of supercoiling in a bacterial chromosome

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription

Dynamics of genetic variation in transcription factors and its implications for the evolution of regulatory networks in Bacteria

Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity

Targeting redox heterogeneity to counteract drug tolerance in replicating Mycobacterium tuberculosis

Restriction modification systems as engines of diversity

Emergence of networks of shared restriction-modification systems in phage–bacteria ecosystems

Genome-scale reconstruction of Gcn4/ATF4 networks driving a growth program

Transcriptional regulatory networks in bacteria: from input signals to output responses

Principles of transcriptional regulation and evolution of the metabolic system in E. coli

The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli

A Mutant RNA Polymerase Activates the General Stress Response, Enabling Escherichia coli Adaptation to Late Prolonged Stationary Phase

Global pleiotropic effects in adaptively evolved Escherichia coli lacking CRP reveal molecular mechanisms that define the growth physiology

Early fate of exogenous promoters in E. coli

Complete Genome Sequence of Uropathogenic Proteus mirabilis, a Master of both Adherence and Motility

Understanding the Genome-Wide Transcription Response To Various cAMP Levels in Bacteria Using Phenomenological Models

Biosensor-integrated transposon mutagenesis reveals rv0158 as a coordinator of redox homeostasis in Mycobacterium tuberculosis

Inhibition of factor-dependent transcription termination in Escherichia coli might relieve xenogene silencing by abrogating H-NS-DNA interactions in vivo

Redox-dependent condensation of the mycobacterial nucleoid by WhiB4

Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase

Reply to Jobling, "Ectopic Expression of the ydaS and ydaT Genes of the Cryptic Prophage Rac of Escherichia coli K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function"

Laboratory Evolution Experiments Help Identify a Predominant Region of Constitutive Stable DNA Replication Initiation

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