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Chromatin loop anchors are associated with genome instability in cancer and recombination hotspots in the germline

Genome Biology, 2018-07, Vol.19 (1), p.101-101, Article 101

2018

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Heterotachy in mammalian promoter evolution

PLoS genetics, 2006-04, Vol.2 (4), p.e30

2006

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Mutational Biases Drive Elevated Rates of Substitution at Regulatory Sites across Cancer Types

PLoS genetics, 2016-08, Vol.12 (8), p.e1006207

2016

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Widespread signatures of recent selection linked to nucleosome positioning in the human lineage

Genome research, 2011-11, Vol.21 (11), p.1777-1787

2011

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Molecular stratification of endometrioid ovarian carcinoma predicts clinical outcome

Nature communications, 2020-10, Vol.11 (1), p.4995-4995, Article 4995

2020

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Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

Molecular systems biology, 2015-12, Vol.11 (12), p.852-n/a

2015

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Posttranscriptional Regulation of miRNAs Harboring Conserved Terminal Loops

Molecular cell, 2008-11, Vol.32 (3), p.383-393

2008

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Intronic CNVs and gene expression variation in human populations

PLoS genetics, 2019-01, Vol.15 (1), p.e1007902

2019

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High-throughput analysis of epistasis in genome-wide association studies with BiForce

Bioinformatics (Oxford, England), 2012-08, Vol.28 (15), p.1957-1964

2012

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Regionally enriched rare deleterious exonic variants in the UK and Ireland

Nature communications, 2024-10, Vol.15 (1), p.8454

2024

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Properties of local interactions and their potential value in complementing genome-wide association studies

PloS one, 2013-08, Vol.8 (8), p.e71203-e71203

2013

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Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

Proceedings of the National Academy of Sciences - PNAS, 2012-04, Vol.109 (16), p.5925-5926

2012

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The circadian dynamics of small nucleolar RNA in the mouse liver

Journal of the Royal Society interface, 2017-05, Vol.14 (130), p.20170034

2017

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Increased ultra-rare variant load in an isolated Scottish population impacts exonic and regulatory regions

PLoS genetics, 2019-11, Vol.15 (11), p.e1008480-e1008480

2019

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Integrative modeling reveals the principles of multi-scale chromatin boundary formation in human nuclear organization

Genome Biology, 2015-05, Vol.16 (1), p.110-110, Article 110

2015

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Genome‐wide methylation profiling in Crohn's disease identifies altered epigenetic regulation of key host defense mechanisms including the Th17 pathway

Inflammatory bowel diseases, 2012-05, Vol.18 (5), p.889-899

2012

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Mutational bias in spermatogonia impacts the anatomy of regulatory sites in the human genome

Genome research, 2021-11, Vol.31 (11), p.1994-2007

2021

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DNA Polymerase Epsilon Deficiency Causes IMAGe Syndrome with Variable Immunodeficiency

American journal of human genetics, 2018-12, Vol.103 (6), p.1038-1044

2018

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The retroviral proteinase active site and the N-terminus of Ddi1 are required for repression of protein secretion

FEBS letters, 2011-01, Vol.585 (1), p.139-142

2011

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When TADs go bad: chromatin structure and nuclear organisation in human disease [version 1; peer review: 2 approved]

F1000 research, 2017, Vol.6, p.314

2017

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Modeling double strand break susceptibility to interrogate structural variation in cancer

Genome Biology, 2019-02, Vol.20 (1), p.28-28, Article 28

2019

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Divergence of mammalian higher order chromatin structure is associated with developmental loci

PLoS computational biology, 2013-04, Vol.9 (4), p.e1003017-e1003017

2013

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ISGylation drives basal breast tumour progression by promoting EGFR recycling and Akt signalling

Oncogene, 2021-11, Vol.40 (44), p.6235-6247

2021

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Chromatin structure and evolution in the human genome

BMC evolutionary biology, 2007-05, Vol.7 (1), p.72

2007

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POCUS: mining genomic sequence annotation to predict disease genes

Genome biology, 2003-01, Vol.4 (11), p.R75-R75, Article R75

2003

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Chromatin loop anchors are associated with genome instability in cancer and recombination hotspots in the germline

Heterotachy in mammalian promoter evolution

Mutational Biases Drive Elevated Rates of Substitution at Regulatory Sites across Cancer Types

Widespread signatures of recent selection linked to nucleosome positioning in the human lineage

Molecular stratification of endometrioid ovarian carcinoma predicts clinical outcome

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

Posttranscriptional Regulation of miRNAs Harboring Conserved Terminal Loops

Intronic CNVs and gene expression variation in human populations

High-throughput analysis of epistasis in genome-wide association studies with BiForce

Regionally enriched rare deleterious exonic variants in the UK and Ireland

Properties of local interactions and their potential value in complementing genome-wide association studies

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

The circadian dynamics of small nucleolar RNA in the mouse liver

Increased ultra-rare variant load in an isolated Scottish population impacts exonic and regulatory regions

Integrative modeling reveals the principles of multi-scale chromatin boundary formation in human nuclear organization

Genome‐wide methylation profiling in Crohn's disease identifies altered epigenetic regulation of key host defense mechanisms including the Th17 pathway

Mutational bias in spermatogonia impacts the anatomy of regulatory sites in the human genome

DNA Polymerase Epsilon Deficiency Causes IMAGe Syndrome with Variable Immunodeficiency

The retroviral proteinase active site and the N-terminus of Ddi1 are required for repression of protein secretion

When TADs go bad: chromatin structure and nuclear organisation in human disease [version 1; peer review: 2 approved]

Modeling double strand break susceptibility to interrogate structural variation in cancer

Divergence of mammalian higher order chromatin structure is associated with developmental loci

ISGylation drives basal breast tumour progression by promoting EGFR recycling and Akt signalling

Chromatin structure and evolution in the human genome

POCUS: mining genomic sequence annotation to predict disease genes

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