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A Novel ML Approach for Computing Missing Sift, Provean, and Mutassessor Scores in Tp53 Mutation Pathogenicity Prediction

International journal of advanced computer science & applications, 2023, Vol.14 (6)

2023

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Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus

Proteins, structure, function, and bioinformatics, 2023-10, Vol.91 (10), p.1427-1436

2023

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K-nearest-neighbor algorithm to predict the survival time and classification of various stages of oral cancer: a machine learning approach [version 2; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2022, Vol.11, p.70-70

2022

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Anomaly Detection on Medical Images using Autoencoder and Convolutional Neural Network

International journal of advanced computer science & applications, 2021, Vol.12 (7)

2021

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Identification of Potential Genes and Critical Pathways in Postoperative Recurrence of Crohn's Disease by Machine Learning And WGCNA Network Analysis

Current genomics, 2023-01, Vol.24 (2), p.84-99

2023

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In vitro and in silico perspectives to explain anticancer activity of a novel syringic acid analog ((4-(1H-1, 3-benzodiazol-2-yl)-2, 6-dimethoxy phenol)) through apoptosis activation and NFkB inhibition in K562 leukemia cells

Computers in biology and medicine, 2023-01, Vol.152, p.106349, Article 106349

2023

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Alternate conformations found in protein structures implies biological functions: A case study using cyclophilin A

Current research in structural biology, 2024-01, Vol.7, p.100145-100145, Article 100145

2024

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Differential activities of the two closely related withanolides, Withaferin A and Withanone: bioinformatics and experimental evidences

PloS one, 2012-09, Vol.7 (9), p.e44419-e44419

2012

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Do we see what we should see? Describing non-covalent interactions in protein structures including precision

IUCrJ, 2014-01, Vol.1 (Pt 1), p.74-81

2014

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sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes

PloS one, 2010-08, Vol.5 (8), p.e11970-e11970

2010

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Novel Pentameric Structure of the Diarrhea-Inducing Region of the Rotavirus Enterotoxigenic Protein NSP4

Journal of Virology, 2011-12, Vol.85 (23), p.12721-12732

2011

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K-nearest-neighbor algorithm to predict the survival time and classification of various stages of oral cancer: a machine learning approach [version 1; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2022, Vol.11, p.70

2022

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Molecular Dynamics Perspective on the Protein Thermal Stability: A Case Study Using SAICAR Synthetase

Journal of chemical information and modeling, 2013-09, Vol.53 (9), p.2448-2461

2013

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Proposing the Promiscuous Protein Structures in JNK1 and JNK3 for Virtual Screening in Pursuit of Potential Leads

ACS omega, 2020-03, Vol.5 (8), p.3969-3978

2020

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Aromatic-aromatic interactions in structures of proteins and protein-DNA complexes: a study based on orientation and distance

Bioinformation, 2012-01, Vol.8 (24), p.1220-1224

2012

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MIPDS: a comprehensive database on the molecular interactions in protein dimer structures

Journal of applied crystallography, 2024-10, Vol.57 (5), p.1667-1675

2024

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Bi-directional long short term memory using recurrent neural network for biological entity recognition

IAES international journal of artificial intelligence, 2022-03, Vol.11 (1), p.89

2022

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Ebolavirus Database: Gene and Protein Information Resource for Ebolaviruses

Advances in Bioinformatics, 2016, Vol.2016, p.80-83

2016

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CSSP-2.0: A refined consensus method for accurate protein secondary structure prediction

Computational biology and chemistry, 2024-10, Vol.112, p.108158, Article 108158

2024

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Identification of potent anti-fibrinolytic compounds against plasminogen and tissue-type plasminogen activator employing in silico approaches

Journal of biomolecular structure & dynamics, 2024-04, Vol.42 (6), p.3204-3222

2024

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Sequence-Structure Similarity: Do Sequentially Identical Peptide Fragments have Similar Three-Dimensional Structures?

Current bioinformatics, 2012-06, Vol.7 (2), p.111-115

2012

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Homepeptide Repeats： Implications for Protein Structure, Function and Evolution

Genomics, proteomics & bioinformatics, 2012-08, Vol.10 (4), p.217-225

2012

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Structural and functional characterization of oligomeric states of proteins in RecFOR pathway

International journal of biological macromolecules, 2020-11, Vol.163, p.943-953

2020

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M Protein from Dengue virus oligomerizes to pentameric channel protein: in silico analysis study

Genomics & informatics, 2023-09, Vol.21 (3), p.e41-e41

2023

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Junker： An Intergenic Explorer for Bacterial Genomes

Genomics, proteomics & bioinformatics, 2011-10, Vol.9 (4-5), p.179-182

2011

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A Novel ML Approach for Computing Missing Sift, Provean, and Mutassessor Scores in Tp53 Mutation Pathogenicity Prediction

Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus

K-nearest-neighbor algorithm to predict the survival time and classification of various stages of oral cancer: a machine learning approach [version 2; peer review: 1 approved, 1 approved with reservations]

Anomaly Detection on Medical Images using Autoencoder and Convolutional Neural Network

Identification of Potential Genes and Critical Pathways in Postoperative Recurrence of Crohn's Disease by Machine Learning And WGCNA Network Analysis

In vitro and in silico perspectives to explain anticancer activity of a novel syringic acid analog ((4-(1H-1, 3-benzodiazol-2-yl)-2, 6-dimethoxy phenol)) through apoptosis activation and NFkB inhibition in K562 leukemia cells

Alternate conformations found in protein structures implies biological functions: A case study using cyclophilin A

Differential activities of the two closely related withanolides, Withaferin A and Withanone: bioinformatics and experimental evidences

Do we see what we should see? Describing non-covalent interactions in protein structures including precision

sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes

Novel Pentameric Structure of the Diarrhea-Inducing Region of the Rotavirus Enterotoxigenic Protein NSP4

K-nearest-neighbor algorithm to predict the survival time and classification of various stages of oral cancer: a machine learning approach [version 1; peer review: 1 approved, 1 approved with reservations]

Molecular Dynamics Perspective on the Protein Thermal Stability: A Case Study Using SAICAR Synthetase

Proposing the Promiscuous Protein Structures in JNK1 and JNK3 for Virtual Screening in Pursuit of Potential Leads

Aromatic-aromatic interactions in structures of proteins and protein-DNA complexes: a study based on orientation and distance

MIPDS: a comprehensive database on the molecular interactions in protein dimer structures

Bi-directional long short term memory using recurrent neural network for biological entity recognition

Ebolavirus Database: Gene and Protein Information Resource for Ebolaviruses

CSSP-2.0: A refined consensus method for accurate protein secondary structure prediction

Identification of potent anti-fibrinolytic compounds against plasminogen and tissue-type plasminogen activator employing in silico approaches

Sequence-Structure Similarity: Do Sequentially Identical Peptide Fragments have Similar Three-Dimensional Structures?

Homepeptide Repeats： Implications for Protein Structure, Function and Evolution

Structural and functional characterization of oligomeric states of proteins in RecFOR pathway

M Protein from Dengue virus oligomerizes to pentameric channel protein: in silico analysis study

Junker： An Intergenic Explorer for Bacterial Genomes

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