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Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria

Applied and environmental microbiology, 2024-07, Vol.90 (7), p.e0025624

2024

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Protein cost minimization promotes the emergence of coenzyme redundancy

Proceedings of the National Academy of Sciences - PNAS, 2022-04, Vol.119 (14), p.e2110787119-e2110787119

2022

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Mapping the landscape of metabolic goals of a cell

Genome Biology, 2016-05, Vol.17 (1), p.109-109, Article 109

2016

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Synthetic Ecology of Microbes: Mathematical Models and Applications

Journal of molecular biology, 2016-02, Vol.428 (5), p.837-861

2016

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Environments that induce synthetic microbial ecosystems

PLoS computational biology, 2010-11, Vol.6 (11), p.e1001002-e1001002

2010

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Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

Nature communications, 2017-11, Vol.8 (1), p.1563-12, Article 1563

2017

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Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life

Science (American Association for the Advancement of Science), 2006-03, Vol.311 (5768), p.1764-1767

2006

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Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

Nature communications, 2019-01, Vol.10 (1), p.103-103, Article 103

2019

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Remnants of an Ancient Metabolism without Phosphate

Cell, 2017-03, Vol.168 (6), p.1126-1134.e9

2017

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Emergent simplicity in microbial community assembly

Science (American Association for the Advancement of Science), 2018-08, Vol.361 (6401), p.469-474

2018

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A multidimensional perspective on microbial interactions

FEMS microbiology letters, 2019-06, Vol.366 (11), p.1

2019

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Microbial carbon use efficiency predicted from genome-scale metabolic models

Nature communications, 2019-08, Vol.10 (1), p.3568-10, Article 3568

2019

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Addressing uncertainty in genome-scale metabolic model reconstruction and analysis

Genome Biology, 2021-02, Vol.22 (1), p.64-64, Article 64

2021

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A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells

Nature biotechnology, 2018-10, Vol.36 (9), p.865-874

2018

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Environmental microbiome engineering for the mitigation of climate change

Global change biology, 2023-04, Vol.29 (8), p.2050-2066

2023

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Non-additive microbial community responses to environmental complexity

Nature communications, 2021-04, Vol.12 (1), p.2365-2365, Article 2365

2021

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Ecosystems biology of microbial metabolism

Current opinion in biotechnology, 2011-08, Vol.22 (4), p.541-546

2011

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Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method

PLoS computational biology, 2006-07, Vol.2 (7), p.e82-e82

2006

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An evolutionary algorithm for designing microbial communities via environmental modification

Journal of the Royal Society interface, 2021-06, Vol.18 (179), p.20210348

2021

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Flux balance analysis of mycolic acid pathway: targets for anti-tubercular drugs

PLoS computational biology, 2005-10, Vol.1 (5), p.e46

2005

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The activity reaction core and plasticity of metabolic networks

PLoS computational biology, 2005-12, Vol.1 (7), p.e68-e68

2005

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Module-based analysis of robustness tradeoffs in the heat shock response system

PLoS computational biology, 2006-07, Vol.2 (7), p.e59-e59

2006

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Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

Science (American Association for the Advancement of Science), 2011-06, Vol.332 (6034), p.1190-1192

2011

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Comparative multi-goal tradeoffs in systems engineering of microbial metabolism

BMC systems biology, 2012-09, Vol.6 (1), p.127-127

2012

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Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools

PLoS computational biology, 2013-08, Vol.9 (8), p.e1003195-e1003195

2013

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Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria

Protein cost minimization promotes the emergence of coenzyme redundancy

Mapping the landscape of metabolic goals of a cell

Synthetic Ecology of Microbes: Mathematical Models and Applications

Environments that induce synthetic microbial ecosystems

Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

Remnants of an Ancient Metabolism without Phosphate

Emergent simplicity in microbial community assembly

A multidimensional perspective on microbial interactions

Microbial carbon use efficiency predicted from genome-scale metabolic models

Addressing uncertainty in genome-scale metabolic model reconstruction and analysis

A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells

Environmental microbiome engineering for the mitigation of climate change

Non-additive microbial community responses to environmental complexity

Ecosystems biology of microbial metabolism

Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method

An evolutionary algorithm for designing microbial communities via environmental modification

Flux balance analysis of mycolic acid pathway: targets for anti-tubercular drugs

The activity reaction core and plasticity of metabolic networks

Module-based analysis of robustness tradeoffs in the heat shock response system

Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

Comparative multi-goal tradeoffs in systems engineering of microbial metabolism

Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools

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