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Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?

BMC bioinformatics, 2023-02, Vol.24 (1), p.64-64, Article 64

2023

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Assessing stationary distributions derived from chromatin contact maps

BMC bioinformatics, 2020-02, Vol.21 (1), p.73-73, Article 73

2020

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Inclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death

Nature, 2004-10, Vol.431 (7010), p.805-810

2004

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Chromosome position determines the success of double-strand break repair

Proceedings of the National Academy of Sciences - PNAS, 2016-01, Vol.113 (2), p.E146-E154

2016

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Derivation of multivariate syndromic outcome metrics for consistent testing across multiple models of cervical spinal cord injury in rats

PloS one, 2013-03, Vol.8 (3), p.e59712-e59712

2013

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Improved accuracy assessment for 3D genome reconstructions

BMC bioinformatics, 2018-05, Vol.19 (1), p.196-196, Article 196

2018

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Proteomics of CKD progression in the chronic renal insufficiency cohort

Nature communications, 2023-10, Vol.14 (1), p.6340-6340, Article 6340

2023

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Epigenomic profiling of newborns with isolated orofacial clefts reveals widespread DNA methylation changes and implicates metastable epiallele regions in disease risk

Epigenetics, 2019-02, Vol.14 (2), p.198-213

2019

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Composition and origin of lung fluid proteome in premature infants and relationship to respiratory outcome

PloS one, 2020-12, Vol.15 (12), p.e0243168-e0243168

2020

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Antiinflammatory Effects of Budesonide in Human Fetal Lung

American journal of respiratory cell and molecular biology, 2016-11, Vol.55 (5), p.623-632

2016

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Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

PloS one, 2010-01, Vol.5 (1), p.e8745-e8745

2010

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Identification of Discrete Prognostic Groups in Ewing Sarcoma

Pediatric blood & cancer, 2016-01, Vol.63 (1), p.47-53

2016

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Assessing chromatin relocalization in 3D using the patient rule induction method

Biostatistics (Oxford, England), 2023-07, Vol.24 (3), p.618-634

Segal, Mark R

2023

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Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients With Stable Coronary Heart Disease

JAMA : the journal of the American Medical Association, 2016-06, Vol.315 (23), p.2532

2016

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DNA Topoisomerase II in Therapy-Related Acute Promyelocytic Leukemia

The New England journal of medicine, 2005-04, Vol.352 (15), p.1529-1538

2005

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A Comparison of Lorazepam, Diazepam, and Placebo for the Treatment of Out-of-Hospital Status Epilepticus

The New England journal of medicine, 2001-08, Vol.345 (9), p.631-637

2001

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A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome

BMC genomics, 2012-11, Vol.13 (1), p.630-630, Article 630

2012

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Identification of yeast transcriptional regulation networks using multivariate random forests

PLoS computational biology, 2009-06, Vol.5 (6), p.e1000414-e1000414

2009

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Metabolomics of oxidative stress in recent studies of endogenous and exogenously administered intermediate metabolites

International Journal of Molecular Sciences, 2011-09, Vol.12 (10), p.6469-6501

2011

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Factors Associated with Frailty and Its Trajectory among Patients on Hemodialysis

Clinical journal of the American Society of Nephrology, 2017-07, Vol.12 (7), p.1100-1108

2017

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Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions

Nucleic acids research, 2016-03, Vol.44 (5), p.2028-2035

2016

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Sequence-based classification using discriminatory motif feature selection

PloS one, 2011-11, Vol.6 (11), p.e27382-e27382

2011

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Can 3D diploid genome reconstruction from unphased Hi-C data be salvaged?

NAR genomics and bioinformatics, 2022-06, Vol.4 (2)

Segal, Mark R

2022

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Identifying differentially expressed genes from microarray experiments via statistic synthesis

Bioinformatics, 2005-04, Vol.21 (7), p.1084-1093

2005

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Principal curve approaches for inferring 3D chromatin architecture

Biostatistics (Oxford, England), 2022-04, Vol.23 (2), p.626-642

2022

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Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?

Assessing stationary distributions derived from chromatin contact maps

Inclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death

Chromosome position determines the success of double-strand break repair

Derivation of multivariate syndromic outcome metrics for consistent testing across multiple models of cervical spinal cord injury in rats

Improved accuracy assessment for 3D genome reconstructions

Proteomics of CKD progression in the chronic renal insufficiency cohort

Epigenomic profiling of newborns with isolated orofacial clefts reveals widespread DNA methylation changes and implicates metastable epiallele regions in disease risk

Composition and origin of lung fluid proteome in premature infants and relationship to respiratory outcome

Antiinflammatory Effects of Budesonide in Human Fetal Lung

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

Identification of Discrete Prognostic Groups in Ewing Sarcoma

Assessing chromatin relocalization in 3D using the patient rule induction method

Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients With Stable Coronary Heart Disease

DNA Topoisomerase II in Therapy-Related Acute Promyelocytic Leukemia

A Comparison of Lorazepam, Diazepam, and Placebo for the Treatment of Out-of-Hospital Status Epilepticus

A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome

Identification of yeast transcriptional regulation networks using multivariate random forests

Metabolomics of oxidative stress in recent studies of endogenous and exogenously administered intermediate metabolites

Factors Associated with Frailty and Its Trajectory among Patients on Hemodialysis

Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions

Sequence-based classification using discriminatory motif feature selection

Can 3D diploid genome reconstruction from unphased Hi-C data be salvaged?

Identifying differentially expressed genes from microarray experiments via statistic synthesis

Principal curve approaches for inferring 3D chromatin architecture

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