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A comparison of topologically associating domain callers over mammals at high resolution

BMC bioinformatics, 2022-04, Vol.23 (1), p.127-127, Article 127

Sefer, Emre

2022

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ProbC: joint modeling of epigenome and transcriptome effects in 3D genome

BMC genomics, 2022-04, Vol.23 (1), p.287-287, Article 287

Sefer, Emre

2022

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Reference-free inferring of transcriptomic events in cancer cells on single-cell data

BMC cancer, 2024-05, Vol.24 (1), p.607-607, Article 607

2024

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Hi–C interaction graph analysis reveals the impact of histone modifications in chromatin shape

Applied network science, 2021-12, Vol.6 (1), p.1-19, Article 54

Sefer, Emre

2021

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Deep Transformer-Based Asset Price and Direction Prediction

IEEE access, 2024, Vol.12, p.24164-24178

2024

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Semi-nonparametric modeling of topological domain formation from epigenetic data

Algorithms for molecular biology, 2019-03, Vol.14 (1), p.4-4, Article 4

2019

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Toward Purple-to-Green-to-Transmissive-to-Black Color Switching in Polymeric Electrochrome

Macromolecules, 2014-12, Vol.47 (24), p.8578-8584

2014

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BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks

IEEE/ACM transactions on computational biology and bioinformatics, 2022-11, Vol.19 (6), p.3103-3113

Sefer, Emre

2022

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IEEE_Xplore

Selecting the most appropriate time points to profile in high-throughput studies

eLife, 2017-01, Vol.6

2017

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Convex Risk Minimization to Infer Networks from probabilistic diffusion data at multiple scales

2015 IEEE 31st International Conference on Data Engineering, 2015, p.663-674

2015

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IEEE_Xplore

MOCMIN: convex inferring of modular low-rank contact networks over COVID diffusion data

Elektrik : Turkish journal of electrical engineering & computer sciences, 2022-11, Vol.30 (7), p.2568-2585

SEFER, EMRE

2022

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Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series Experiments

Cell systems, 2016-07, Vol.3 (1), p.35-42

2016

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Metric Labeling and Semimetric Embedding for Protein Annotation Prediction

Journal of computational biology, 2021-05, Vol.28 (5), p.514

2021

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BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERT

IEEE/ACM transactions on computational biology and bioinformatics, 2023-05, Vol.20 (3), p.2177-2189

2023

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IEEE_Xplore

A new conducting polymer of 2,5-bis(2-thienyl)-1H-(pyrrole) (SNS) containing carbazole subunit: Electrochemical, optical and electrochromic properties

Synthetic metals, 2009-10, Vol.159 (19-20), p.2013-2021

2009

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Diffusion archeology for diffusion progression history reconstruction

Knowledge and information systems, 2016-11, Vol.49 (2), p.403-427

2016

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Parsimonious reconstruction of network evolution

Algorithms for molecular biology, 2012-09, Vol.7 (1), p.25-25, Article 25

2012

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Joint Modeling of Histone Modifications in 3D Genome Shape Through Hi-C Interaction Graph

Complex Networks & Their Applications IX, p.410-421

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Optimal Reconstruction of Graph Evolution Dynamics for Duplication-Based Models

Complex Networks & Their Applications XII, p.470-483

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Carbazole based D-A-π-A chromophores for dye sensitized solar cells: Effect of the side alkyl chain length on device performance

International journal of hydrogen energy, 2017-03, Vol.42 (12), p.8569-8575

2017

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Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations

Journal of computational biology, 2016-06, Vol.23 (6), p.425

2016

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new near-infrared switchable electrochromic polymer and its device application

Journal of polymer science. Part A, Polymer chemistry, 2010-10, Vol.48 (20), p.4419-4427

2010

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A narrow range multielectrochromism from 2,5-di-(2-thienyl)-1H-pyrrole polymer bearing pendant perylenediimide moiety

Dyes and pigments, 2015-02, Vol.113, p.121-128

2015

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Naphthalenediimide bridged D-A polymers: Design, synthesis and electrochromic properties

Electrochimica acta, 2014-10, Vol.143, p.106-113

2014

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Effect of a pi-bridging unit in triphenylamine-benzothiadiazole based donor acceptor chromophores for dye-sensitized solar cells

Electrochimica acta, 2014-11, Vol.147, p.617-625

2014

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A comparison of topologically associating domain callers over mammals at high resolution

ProbC: joint modeling of epigenome and transcriptome effects in 3D genome

Reference-free inferring of transcriptomic events in cancer cells on single-cell data

Hi–C interaction graph analysis reveals the impact of histone modifications in chromatin shape

Deep Transformer-Based Asset Price and Direction Prediction

Semi-nonparametric modeling of topological domain formation from epigenetic data

Toward Purple-to-Green-to-Transmissive-to-Black Color Switching in Polymeric Electrochrome

BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks

Selecting the most appropriate time points to profile in high-throughput studies

Convex Risk Minimization to Infer Networks from probabilistic diffusion data at multiple scales

MOCMIN: convex inferring of modular low-rank contact networks over COVID diffusion data

Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series Experiments

Metric Labeling and Semimetric Embedding for Protein Annotation Prediction

BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERT

A new conducting polymer of 2,5-bis(2-thienyl)-1H-(pyrrole) (SNS) containing carbazole subunit: Electrochemical, optical and electrochromic properties

Diffusion archeology for diffusion progression history reconstruction

Parsimonious reconstruction of network evolution

Joint Modeling of Histone Modifications in 3D Genome Shape Through Hi-C Interaction Graph

Optimal Reconstruction of Graph Evolution Dynamics for Duplication-Based Models

Carbazole based D-A-π-A chromophores for dye sensitized solar cells: Effect of the side alkyl chain length on device performance

Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations

new near-infrared switchable electrochromic polymer and its device application

A narrow range multielectrochromism from 2,5-di-(2-thienyl)-1H-pyrrole polymer bearing pendant perylenediimide moiety

Naphthalenediimide bridged D-A polymers: Design, synthesis and electrochromic properties

Effect of a pi-bridging unit in triphenylamine-benzothiadiazole based donor acceptor chromophores for dye-sensitized solar cells

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