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Environmental systems biology of cold‐tolerant phenotype in Saccharomyces species adapted to grow at different temperatures

Molecular ecology, 2014-11, Vol.23 (21), p.5241-5257

2014

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From empirical to theoretical models of light response curves - linking photosynthetic and metabolic acclimation

Photosynthesis research, 2020-07, Vol.145 (1), p.5-14

2020

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Why COVID-19 models should incorporate the network of social interactions

Physical biology, 2020-11, Vol.17 (6), p.065008-065008

2020

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COVID-19 vaccination strategies depend on the underlying network of social interactions

Scientific reports, 2021-12, Vol.11 (1), p.24051-24051, Article 24051

2021

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Metabolic flux from the chloroplast provides signals controlling photosynthetic acclimation to cold in Arabidopsis thaliana

Plant, cell and environment, 2021-01, Vol.44 (1), p.171-185

2021

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Stratification of knee osteoarthritis: two major patient subgroups identified by genome-wide expression analysis of articular cartilage

Annals of the rheumatic diseases, 2018-03, Vol.77 (3), p.423

2018

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Using set theory to reduce redundancy in pathway sets

BMC bioinformatics, 2018-10, Vol.19 (1), p.386-386, Article 386

2018

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Mechanical loading activates the YAP/TAZ pathway and chemokine expression in the MLO-Y4 osteocyte-like cell line

Laboratory investigation, 2021-12, Vol.101 (12), p.1597-1604

2021

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The chaperone activity of 4PBA ameliorates the skeletal phenotype of Chihuahua, a zebrafish model for dominant osteogenesis imperfecta

Human molecular genetics, 2017-08, Vol.26 (15), p.2897-2911

2017

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HIHISIV: a database of gene expression in HIV and SIV host immune response

BMC bioinformatics, 2024-03, Vol.25 (1), p.125-125

2024

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A genome-scale metabolic model of parasitic whipworm

Nature communications, 2023-10, Vol.14 (1), p.6937-6937, Article 6937

2023

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Spatially resolved phosphoproteomics reveals fibroblast growth factor receptor recycling-driven regulation of autophagy and survival

Nature communications, 2022-11, Vol.13 (1), p.6589-6589, Article 6589

2022

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A Holistic Approach to Study Photosynthetic Acclimation Responses of Plants to Fluctuating Light

Frontiers in plant science, 2021-04, Vol.12, p.668512

2021

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Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues

Nature communications, 2019-06, Vol.10 (1), p.2725-9, Article 2725

2019

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A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion

PLoS computational biology, 2016-05, Vol.12 (5), p.e1004909-e1004909

2016

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Calcium activated nucleotidase 1 (CANT1) is critical for glycosaminoglycan biosynthesis in cartilage and endochondral ossification

Matrix biology, 2019-08, Vol.81, p.70-90

2019

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A quantitative brain map of experimental cerebral malaria pathology

PLoS pathogens, 2017-03, Vol.13 (3), p.e1006267-e1006267

2017

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Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008213-e1008213

2021

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Measuring criticality in control of complex biological networks

NPJ systems biology and applications, 2024-01, Vol.10 (1), p.9-9, Article 9

2024

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Flux balance analysis reveals acetate metabolism modulates cyclic electron flow and alternative glycolytic pathways in Chlamydomonas reinhardtii

Frontiers in plant science, 2015-06, Vol.6, p.474-474

2015

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Functional selectivity of Receptor Tyrosine Kinases regulates distinct cellular outputs

Frontiers in cell and developmental biology, 2024-01, Vol.11, p.1348056-1348056

2024

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A calpain-6/YAP axis in sarcoma stem cells that drives the outgrowth of tumors and metastases

Cell death & disease, 2022-09, Vol.13 (9), p.819-819, Article 819

2022

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Special Issue: New Advances in Bioinformatics and Biomedical Engineering Using Machine Learning Techniques, IWBBIO-2022

Genes, 2023-08, Vol.14 (8), p.1574

2023

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Modularity in protein complex and drug interactions reveals new polypharmacological properties

PloS one, 2012-01, Vol.7 (1), p.e30028

2012

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XBP1 signalling is essential for alleviating mutant protein aggregation in ER-stress related skeletal disease

PLoS genetics, 2019-07, Vol.15 (7), p.e1008215-e1008215

2019

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Environmental systems biology of cold‐tolerant phenotype in Saccharomyces species adapted to grow at different temperatures

From empirical to theoretical models of light response curves - linking photosynthetic and metabolic acclimation

Why COVID-19 models should incorporate the network of social interactions

COVID-19 vaccination strategies depend on the underlying network of social interactions

Metabolic flux from the chloroplast provides signals controlling photosynthetic acclimation to cold in Arabidopsis thaliana

Stratification of knee osteoarthritis: two major patient subgroups identified by genome-wide expression analysis of articular cartilage

Using set theory to reduce redundancy in pathway sets

Mechanical loading activates the YAP/TAZ pathway and chemokine expression in the MLO-Y4 osteocyte-like cell line

The chaperone activity of 4PBA ameliorates the skeletal phenotype of Chihuahua, a zebrafish model for dominant osteogenesis imperfecta

HIHISIV: a database of gene expression in HIV and SIV host immune response

A genome-scale metabolic model of parasitic whipworm

Spatially resolved phosphoproteomics reveals fibroblast growth factor receptor recycling-driven regulation of autophagy and survival

A Holistic Approach to Study Photosynthetic Acclimation Responses of Plants to Fluctuating Light

Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues

A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion

Calcium activated nucleotidase 1 (CANT1) is critical for glycosaminoglycan biosynthesis in cartilage and endochondral ossification

A quantitative brain map of experimental cerebral malaria pathology

Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration

Measuring criticality in control of complex biological networks

Flux balance analysis reveals acetate metabolism modulates cyclic electron flow and alternative glycolytic pathways in Chlamydomonas reinhardtii

Functional selectivity of Receptor Tyrosine Kinases regulates distinct cellular outputs

A calpain-6/YAP axis in sarcoma stem cells that drives the outgrowth of tumors and metastases

Special Issue: New Advances in Bioinformatics and Biomedical Engineering Using Machine Learning Techniques, IWBBIO-2022

Modularity in protein complex and drug interactions reveals new polypharmacological properties

XBP1 signalling is essential for alleviating mutant protein aggregation in ER-stress related skeletal disease

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