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Transcriptome-wide Regulation of Pre-mRNA Splicing and mRNA Localization by Muscleblind Proteins

Cell, 2012-08, Vol.150 (4), p.710-724

2012

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From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing

Genome research, 2014-03, Vol.24 (3), p.496

2014

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High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain

Science (American Association for the Advancement of Science), 2010-08, Vol.329 (5992), p.643-648

2010

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Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Nature biotechnology, 2012-08, Vol.30 (8), p.777-782

2012

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Cohesin-mediated interactions organize chromosomal domain architecture

The EMBO journal, 2013-12, Vol.32 (24), p.3119-3129

2013

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Alternative isoform regulation in human tissue transcriptomes

Nature, 2008-11, Vol.456 (7221), p.470-476

2008

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Single-Cell Transcriptome Analysis Reveals Dynamic Changes in lncRNA Expression during Reprogramming

Cell stem cell, 2015-01, Vol.16 (1), p.88-101

2015

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Proceedings of the National Academy of Sciences - PNAS, 2011-07, Vol.108 (27), p.11063-11068

2011

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Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq

PLoS biology, 2011-02, Vol.9 (2), p.e1000590-e1000590

2011

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Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

Genes & development, 2010-05, Vol.24 (10), p.992-1009

2010

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Meraculous: de novo genome assembly with short paired-end reads

PloS one, 2011-08, Vol.6 (8), p.e23501

2011

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Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument

Nature biotechnology, 2011-07, Vol.29 (7), p.659-664

2011

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Carrier testing for severe childhood recessive diseases by next-generation sequencing

Science translational medicine, 2011-01, Vol.3 (65), p.65ra4

2011

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Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling

Nature methods, 2014-06, Vol.11 (6), p.683

2014

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Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia

PLoS genetics, 2012-06, Vol.8 (6), p.e1002781-e1002781

2012

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PRG-1 and 21U-RNAs Interact to Form the piRNA Complex Required for Fertility in C. elegans

Molecular cell, 2008-07, Vol.31 (1), p.67-78

2008

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Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

Genome Research, 2009-06, Vol.19 (6), p.1044-1056

2009

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Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes

BMC microbiology, 2023-10, Vol.23 (1), p.1-299, Article 299

2023

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Bead-linked transposomes enable a normalization-free workflow for NGS library preparation

BMC genomics, 2018-10, Vol.19 (1), p.722-722, Article 722

2018

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Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing

PloS one, 2011-02, Vol.6 (2), p.e17490-e17490

2011

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Modeling and automation of sequencing-based characterization of RNA structure

Proceedings of the National Academy of Sciences - PNAS, 2011-07, Vol.108 (27), p.11069-11074

2011

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Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation

BMC genomics, 2011-01, Vol.12 (1), p.36-36, Article 36

2011

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High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing

PloS one, 2010-08, Vol.5 (8), p.e12010-e12010

2010

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Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D737

2015

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mRNA Capture Sequencing and RT-qPCR for the Detection of Pathognomonic, Novel, and Secondary Fusion Transcripts in FFPE Tissue: A Sarcoma Showcase

International journal of molecular sciences, 2022-10, Vol.23 (19), p.11007

2022

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Transcriptome-wide Regulation of Pre-mRNA Splicing and mRNA Localization by Muscleblind Proteins

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing

High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Cohesin-mediated interactions organize chromosomal domain architecture

Alternative isoform regulation in human tissue transcriptomes

Single-Cell Transcriptome Analysis Reveals Dynamic Changes in lncRNA Expression during Reprogramming

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

Meraculous: de novo genome assembly with short paired-end reads

Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument

Carrier testing for severe childhood recessive diseases by next-generation sequencing

Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling

Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia

PRG-1 and 21U-RNAs Interact to Form the piRNA Complex Required for Fertility in C. elegans

Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes

Bead-linked transposomes enable a normalization-free workflow for NGS library preparation

Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing

Modeling and automation of sequencing-based characterization of RNA structure

Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation

High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)

mRNA Capture Sequencing and RT-qPCR for the Detection of Pathognomonic, Novel, and Secondary Fusion Transcripts in FFPE Tissue: A Sarcoma Showcase

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