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mixOmics: An R package for 'omics feature selection and multiple data integration

PLoS computational biology, 2017-11, Vol.13 (11), p.e1005752-e1005752

2017

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OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement

PLoS computational biology, 2018-07, Vol.14 (7), p.e1006223-e1006223

2018

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A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data

Proteomics (Weinheim), 2023-09, Vol.23 (17), p.e2200341-n/a

2023

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Mindboggling morphometry of human brains

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005350-e1005350

2017

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Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

PLoS computational biology, 2018-06, Vol.14 (6), p.e1006245-e1006245

2018

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Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes

Nature communications, 2021-08, Vol.12 (1), p.4676-4676, Article 4676

2021

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The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor

Viruses, 2020-05, Vol.12 (5), p.497

2020

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Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2

Science (American Association for the Advancement of Science), 2020-12, Vol.370 (6523), p.1479-1484

2020

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Integrative Structure Modeling: Overview and Assessment

Annual review of biochemistry, 2019-06, Vol.88, p.113

2019

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The SKMT Algorithm: A method for assessing and comparing underlying protein entanglement

PLoS computational biology, 2023-11, Vol.19 (11), p.e1011248-e1011248

2023

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Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

Biophysical journal, 2013-08, Vol.105 (4), p.962-974

2013

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Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution

PLoS computational biology, 2023-08, Vol.19 (8), p.e1011090-e1011090

2023

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speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification

PLoS computational biology, 2018-03, Vol.14 (3), p.e1006018-e1006018

2018

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NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning

Frontiers in immunology, 2022-08, Vol.13, p.958584-958584

2022

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Dissecting peripheral protein-membrane interfaces

PLoS computational biology, 2022-12, Vol.18 (12), p.e1010346-e1010346

2022

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Uncertainty in integrative structural modeling

Current opinion in structural biology, 2014-10, Vol.28, p.96-104

2014

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MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005575-e1005575

2017

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Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods

PLoS computational biology, 2022-12, Vol.18 (12), p.e1010230-e1010230

2022

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An integrated suite of fast docking algorithms

Proteins, structure, function, and bioinformatics, 2010-11, Vol.78 (15), p.3197-3204

2010

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De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A

American journal of medical genetics. Part B, Neuropsychiatric genetics, 2020-10, Vol.183 (7), p.412-422

2020

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NFTsim: Theory and Simulation of Multiscale Neural Field Dynamics

PLoS computational biology, 2018-08, Vol.14 (8), p.e1006387-e1006387

2018

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BIPS—A code base for designing and coding of a Phage ImmunoPrecipitation Oligo Library

PLoS computational biology, 2022-11, Vol.18 (11), p.e1010663-e1010663

2022

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Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

PLoS biology, 2012-01, Vol.10 (1), p.e1001244-e1001244

2012

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EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006128-e1006128

2018

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mixOmics: An R package for 'omics feature selection and multiple data integration

OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement

A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data

Mindboggling morphometry of human brains

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes

The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor

Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2

Integrative Structure Modeling: Overview and Assessment

The SKMT Algorithm: A method for assessing and comparing underlying protein entanglement

Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification

NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning

Dissecting peripheral protein-membrane interfaces

Uncertainty in integrative structural modeling

MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures

Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods

An integrated suite of fast docking algorithms

De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A

NFTsim: Theory and Simulation of Multiscale Neural Field Dynamics

BIPS—A code base for designing and coding of a Phage ImmunoPrecipitation Oligo Library

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos

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