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Single-cell and long-read sequencing to enhance modelling of splicing and cell-fate determination

Computational and structural biotechnology journal, 2023-01, Vol.21, p.2373-2380

2023

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Recent advances in cancer fusion transcript detection

Briefings in bioinformatics, 2023-01, Vol.24 (1)

2023

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The application of long-read sequencing in clinical settings

Human genomics, 2023-08, Vol.17 (1), p.73-73, Article 73

2023

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Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures

Nature communications, 2017-08, Vol.8 (1), p.198-15, Article 198

2017

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Intron retention enhances gene regulatory complexity in vertebrates

Genome Biology, 2017-11, Vol.18 (1), p.216-216, Article 216

2017

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Systems Biology of MicroRNAs in Cancer

1, 2022

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A dynamic intron retention program in the mammalian megakaryocyte and erythrocyte lineages

Blood, 2016-04, Vol.127 (17), p.e24-e34

2016

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E2F1 induces miR-224/452 expression to drive EMT through TXNIP downregulation

EMBO reports, 2014-12, Vol.15 (12), p.1315-1329

2014

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Challenges in defining the role of intron retention in normal biology and disease

Seminars in cell & developmental biology, 2018-03, Vol.75, p.40-49

2018

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E2F1 confers anticancer drug resistance by targeting ABC transporter family members and Bcl-2 via the p73/DNp73-miR-205 circuitry

Cell cycle (Georgetown, Tex.), 2012-08, Vol.11 (16), p.3067-3078

2012

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TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation

BMC bioinformatics, 2016-01, Vol.17 (6), p.21-21, Article 21

2016

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MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance

Theranostics, 2018, Vol.8 (4), p.1106-1120

2018

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MicroRNA and Transcription Factor Gene Regulatory Network Analysis Reveals Key Regulatory Elements Associated with Prostate Cancer Progression

PloS one, 2016-12, Vol.11 (12), p.e0168760

2016

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Towards resolution of the intron retention paradox in breast cancer

Breast cancer research : BCR, 2022-12, Vol.24 (1), p.100-100, Article 100

2022

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Identifying Cancer Driver Genes in Individual Tumours

Computational and structural biotechnology journal, 2023-01, Vol.21, p.5028-5038

2023

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Climate change and floodplain vegetation—future prospects for riparian habitat availability along the Rhine River

Ecological engineering, 2015-09, Vol.82, p.493-511

2015

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The Fusion of CLEC12A and MIR223HG Arises from a trans -Splicing Event in Normal and Transformed Human Cells

International journal of molecular sciences, 2021-11, Vol.22 (22), p.12178

2021

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The Intricate Interplay between Epigenetic Events, Alternative Splicing and Noncoding RNA Deregulation in Colorectal Cancer

Cells (Basel, Switzerland), 2019-08, Vol.8 (8), p.929

2019

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Network-Based and Machine-Learning Approaches Identify Diagnostic and Prognostic Models for EMT-Type Gastric Tumors

Genes, 2023-03, Vol.14 (3), p.750

2023

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An Investigation of MicroRNA Target Regulation Mechanisms Using an Integrative Approach

Schmitz, Ulf

1, 2015

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Study of the Female Sex Survival Advantage in Melanoma-A Focus on X-Linked Epigenetic Regulators and Immune Responses in Two Cohorts

Cancers, 2020-07, Vol.12 (8), p.2082

2020

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Identifying microRNA determinants of human myelopoiesis

Scientific reports, 2018-05, Vol.8 (1), p.7264-15, Article 7264

2018

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Systems biology-based investigation of cooperating microRNAs as monotherapy or adjuvant therapy in cancer

Nucleic acids research, 2019-09, Vol.47 (15), p.7753-7766

2019

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Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets

Methods in molecular biology (Clifton, N.J.), 2023, Vol.2630, p.155

Schmitz, Ulf

2023

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Ctcf haploinsufficiency mediates intron retention in a tissue-specific manner

RNA biology, 2021, Vol.18 (1), p.93-103

2021

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Single-cell and long-read sequencing to enhance modelling of splicing and cell-fate determination

Recent advances in cancer fusion transcript detection

The application of long-read sequencing in clinical settings

Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures

Intron retention enhances gene regulatory complexity in vertebrates

Systems Biology of MicroRNAs in Cancer

A dynamic intron retention program in the mammalian megakaryocyte and erythrocyte lineages

E2F1 induces miR-224/452 expression to drive EMT through TXNIP downregulation

Challenges in defining the role of intron retention in normal biology and disease

E2F1 confers anticancer drug resistance by targeting ABC transporter family members and Bcl-2 via the p73/DNp73-miR-205 circuitry

TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation

MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance

MicroRNA and Transcription Factor Gene Regulatory Network Analysis Reveals Key Regulatory Elements Associated with Prostate Cancer Progression

Towards resolution of the intron retention paradox in breast cancer

Identifying Cancer Driver Genes in Individual Tumours

Climate change and floodplain vegetation—future prospects for riparian habitat availability along the Rhine River

The Fusion of CLEC12A and MIR223HG Arises from a trans -Splicing Event in Normal and Transformed Human Cells

The Intricate Interplay between Epigenetic Events, Alternative Splicing and Noncoding RNA Deregulation in Colorectal Cancer

Network-Based and Machine-Learning Approaches Identify Diagnostic and Prognostic Models for EMT-Type Gastric Tumors

An Investigation of MicroRNA Target Regulation Mechanisms Using an Integrative Approach

Study of the Female Sex Survival Advantage in Melanoma-A Focus on X-Linked Epigenetic Regulators and Immune Responses in Two Cohorts

Identifying microRNA determinants of human myelopoiesis

Systems biology-based investigation of cooperating microRNAs as monotherapy or adjuvant therapy in cancer

Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets

Ctcf haploinsufficiency mediates intron retention in a tissue-specific manner

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