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Mabs, a suite of tools for gene-informed genome assembly

BMC bioinformatics, 2023-10, Vol.24 (1), p.1-377, Article 377

Schelkunov, Mikhail I

2023

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RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

BMC genomics, 2018-08, Vol.19 (1), p.602-602, Article 602

2018

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Exploring the limits for reduction of plastid genomes: a case study of the mycoheterotrophic orchids Epipogium aphyllum and Epipogium roseum

Genome biology and evolution, 2015-04, Vol.7 (4), p.1179-1191

2015

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Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis

Plant methods, 2024-08, Vol.20 (1), p.128-11

2024

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Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known

PeerJ (San Francisco, CA), 2019-09, Vol.7, p.e7500, Article e7500

2019

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Mitochondrial genome of the nonphotosynthetic mycoheterotrophic plant Hypopitys monotropa , its structure, gene expression and RNA editing

PeerJ (San Francisco, CA), 2020-06, Vol.8, p.e9309-e9309, Article e9309

2020

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Genome-wide response on phytosterol in 9-hydroxyandrostenedione-producing strain of Mycobacterium sp. VKM Ac-1817D

BMC biotechnology, 2019-06, Vol.19 (1), p.39-39, Article 39

2019

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Comparative Analysis of Plastid Genomes in the Non-photosynthetic Genus Thismia Reveals Ongoing Gene Set Reduction

Frontiers in plant science, 2021-03, Vol.12, p.602598-602598

2021

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Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives

PeerJ (San Francisco, CA), 2021-08, Vol.9, p.e12106-e12106, Article e12106

2021

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Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis

Genome biology and evolution, 2011-01, Vol.3, p.1296-1303

2011

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Genome-wide bioinformatics analysis of steroid metabolism-associated genes in Nocardioides simplex VKM Ac-2033D

Current genetics, 2016-08, Vol.62 (3), p.643-656

2016

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The plastid genome of mycoheterotrophic monocot Petrosavia stellaris exhibits both gene losses and multiple rearrangements

Genome biology and evolution, 2014-01, Vol.6 (1), p.238-246

2014

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C-Type Natriuretic Peptide Acts as a Microorganism-Activated Regulator of the Skin Commensals Staphylococcus epidermidis and Cutibacterium acnes in Dual-Species Biofilms

Biology (Basel, Switzerland), 2023-03, Vol.12 (3), p.436

2023

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Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris

Plants (Basel), 2020-04, Vol.9 (4), p.469

2020

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Mitochondrial Genome of Fagopyrum esculentum and the Genetic Diversity of Extranuclear Genomes in Buckwheat

Plants (Basel), 2020-05, Vol.9 (5), p.618

2020

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Complete genome assembly data of paenibacillus sp. RUD330, a hypothetical symbiont of euglena gracilis

Data in brief, 2020-10, Vol.32, p.106070-106070, Article 106070

2020

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The genome of the toxic invasive species Heracleum sosnowskyi carries an increased number of genes despite absence of recent whole‐genome duplications

The Plant journal : for cell and molecular biology, 2024-01, Vol.117 (2), p.449-463

2024

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Phylogenetics of the mycoheterotrophic genus Thismia (Thismiaceae: Dioscoreales) with a focus on the Old World taxa: delineation of novel natural groups and insights into the evolution of morphological traits

Botanical journal of the Linnean Society, 2020-06, Vol.193 (3), p.287-315

2020

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Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives

Scientific reports, 2016-07, Vol.6 (1), p.30042, Article 30042

2016

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Effect of methyl-β-cyclodextrin on gene expression in microbial conversion of phytosterol

Applied microbiology and biotechnology, 2017-06, Vol.101 (11), p.4659-4667

2017

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Different genome-wide transcriptome responses of Nocardioides simplex VKM Ac-2033D to phytosterol and cortisone 21-acetate

BMC biotechnology, 2021-01, Vol.21 (1), p.7-20, Article 7

2021

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Knockdown of the neuronal gene Lim3 at the early stages of development affects mitochondrial function and lifespan in Drosophila

Mechanisms of ageing and development, 2019-07, Vol.181, p.29-41

2019

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Palynological study of Asian Thismia (Thismiaceae: Dioscoreales) reveals an unusual pollen type

Plant systematics and evolution, 2021-10, Vol.307 (5), Article 54

2021

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Genome Sequencing of Steroid-Producing Bacteria with Illumina Technology

Methods in molecular biology (Clifton, N.J.), 2017-01, Vol.1645, p.29

2017

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Genome-Wide Transcriptome Profiling Provides Insight on Cholesterol and Lithocholate Degradation Mechanisms in Nocardioides simplex VKM Ac-2033D

Genes, 2020-10, Vol.11 (10), p.1229

2020

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Mabs, a suite of tools for gene-informed genome assembly

RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

Exploring the limits for reduction of plastid genomes: a case study of the mycoheterotrophic orchids Epipogium aphyllum and Epipogium roseum

Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis

Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known

Mitochondrial genome of the nonphotosynthetic mycoheterotrophic plant Hypopitys monotropa , its structure, gene expression and RNA editing

Genome-wide response on phytosterol in 9-hydroxyandrostenedione-producing strain of Mycobacterium sp. VKM Ac-1817D

Comparative Analysis of Plastid Genomes in the Non-photosynthetic Genus Thismia Reveals Ongoing Gene Set Reduction

Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives

Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis

Genome-wide bioinformatics analysis of steroid metabolism-associated genes in Nocardioides simplex VKM Ac-2033D

The plastid genome of mycoheterotrophic monocot Petrosavia stellaris exhibits both gene losses and multiple rearrangements

C-Type Natriuretic Peptide Acts as a Microorganism-Activated Regulator of the Skin Commensals Staphylococcus epidermidis and Cutibacterium acnes in Dual-Species Biofilms

Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris

Mitochondrial Genome of Fagopyrum esculentum and the Genetic Diversity of Extranuclear Genomes in Buckwheat

Complete genome assembly data of paenibacillus sp. RUD330, a hypothetical symbiont of euglena gracilis

The genome of the toxic invasive species Heracleum sosnowskyi carries an increased number of genes despite absence of recent whole‐genome duplications

Phylogenetics of the mycoheterotrophic genus Thismia (Thismiaceae: Dioscoreales) with a focus on the Old World taxa: delineation of novel natural groups and insights into the evolution of morphological traits

Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives

Effect of methyl-β-cyclodextrin on gene expression in microbial conversion of phytosterol

Different genome-wide transcriptome responses of Nocardioides simplex VKM Ac-2033D to phytosterol and cortisone 21-acetate

Knockdown of the neuronal gene Lim3 at the early stages of development affects mitochondrial function and lifespan in Drosophila

Palynological study of Asian Thismia (Thismiaceae: Dioscoreales) reveals an unusual pollen type

Genome Sequencing of Steroid-Producing Bacteria with Illumina Technology

Genome-Wide Transcriptome Profiling Provides Insight on Cholesterol and Lithocholate Degradation Mechanisms in Nocardioides simplex VKM Ac-2033D

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