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Genomic transition of enterococci from gut commensals to leading causes of multidrug-resistant hospital infection in the antibiotic era

Current opinion in microbiology, 2013-02, Vol.16 (1), p.10-16

2013

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Effects of early-life antibiotics on the developing infant gut microbiome and resistome: a randomized trial

Nature communications, 2022-02, Vol.13 (1), p.893-893, Article 893

2022

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Limited influence of hospital wastewater on the microbiome and resistome of wastewater in a community sewerage system

FEMS microbiology ecology, 2018-07, Vol.94 (7)

2018

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Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium

Journal of clinical microbiology, 2015-12, Vol.53 (12), p.3788-3797

2015

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The human gut resistome

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2015-06, Vol.370 (1670), p.20140087

van Schaik, Willem

2015

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CRISPR-Cas9-mediated genome editing in vancomycin-resistant Enterococcus faecium

FEMS microbiology letters, 2019-11, Vol.366 (22), p.1

2019

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Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli

Gut microbes, 2022-12, Vol.14 (1), p.2060676-2060676

2022

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Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects

Microbiome, 2017-08, Vol.5 (1), p.88-88, Article 88

2017

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Selective decontamination of the digestive tract in critically ill children: fighting fire with fire or burning down the house?

Gut, 2024-06, Vol.73 (6), p.883-884

2024

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Genome-wide identification of ampicillin resistance determinants in Enterococcus faecium

PLoS genetics, 2012-06, Vol.8 (6), p.e1002804

2012

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Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis

Clinical microbiology reviews, 2017-10, Vol.30 (4), p.1015-1063

2017

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Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

Infection and Immunity, 2009-10, Vol.77 (10), p.4437-4445

2009

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Nonclonal Emergence of Colistin Resistance Associated with Mutations in the BasRS Two-Component System in Escherichia coli Bloodstream Isolates

mSphere, 2020-03, Vol.5 (2)

2020

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Challenges and opportunities for whole‐genome sequencing–based surveillance of antibiotic resistance

Annals of the New York Academy of Sciences, 2017-01, Vol.1388 (1), p.108-120

2017

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Harder, better, faster, stronger: Colistin resistance mechanisms in Escherichia coli

PLoS genetics, 2021-01, Vol.17 (1), p.e1009262-e1009262

2021

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Characterization of Enterococcus Isolates Colonizing the Intestinal Tract of Intensive Care Unit Patients Receiving Selective Digestive Decontamination

Frontiers in microbiology, 2017-08, Vol.8, p.1596-1596

2017

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Baas Becking meets One Health

Nature microbiology, 2022-04, Vol.7 (4), p.482-483

van Schaik, Willem

2022

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Horizontal transfer of antibiotic resistance genes in the human gut microbiome

Current opinion in microbiology, 2020-02, Vol.53, p.35-43

2020

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Global Emergence and Dissemination of Enterococci as Nosocomial Pathogens: Attack of the Clones?

Frontiers in microbiology, 2016-05, Vol.7, p.788-788

2016

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Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages

PLoS genetics, 2014-12, Vol.10 (12), p.e1004776-e1004776

2014

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On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data

Microbial genomics, 2017-10, Vol.3 (10), p.e000128-e000128

2017

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The Recombinase IntA Is Required for Excision of esp-Containing ICEEfm1 in Enterococcus faecium

Journal of Bacteriology, 2011-02, Vol.193 (4), p.1003-1006

2011

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Rapid resistome mapping using nanopore sequencing

Nucleic acids research, 2017-05, Vol.45 (8), p.e61

2017

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Antibiotic resistant enterococci—Tales of a drug resistance gene trafficker

International journal of medical microbiology, 2013-08, Vol.303 (6), p.360-379

2013

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Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains

mBio, 2013-08, Vol.4 (4)

2013

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Genomic transition of enterococci from gut commensals to leading causes of multidrug-resistant hospital infection in the antibiotic era

Effects of early-life antibiotics on the developing infant gut microbiome and resistome: a randomized trial

Limited influence of hospital wastewater on the microbiome and resistome of wastewater in a community sewerage system

Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium

The human gut resistome

CRISPR-Cas9-mediated genome editing in vancomycin-resistant Enterococcus faecium

Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli

Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects

Selective decontamination of the digestive tract in critically ill children: fighting fire with fire or burning down the house?

Genome-wide identification of ampicillin resistance determinants in Enterococcus faecium

Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis

Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

Nonclonal Emergence of Colistin Resistance Associated with Mutations in the BasRS Two-Component System in Escherichia coli Bloodstream Isolates

Challenges and opportunities for whole‐genome sequencing–based surveillance of antibiotic resistance

Harder, better, faster, stronger: Colistin resistance mechanisms in Escherichia coli

Characterization of Enterococcus Isolates Colonizing the Intestinal Tract of Intensive Care Unit Patients Receiving Selective Digestive Decontamination

Baas Becking meets One Health

Horizontal transfer of antibiotic resistance genes in the human gut microbiome

Global Emergence and Dissemination of Enterococci as Nosocomial Pathogens: Attack of the Clones?

Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages

On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data

The Recombinase IntA Is Required for Excision of esp-Containing ICEEfm1 in Enterococcus faecium

Rapid resistome mapping using nanopore sequencing

Antibiotic resistant enterococci—Tales of a drug resistance gene trafficker

Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains

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