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Predicting inhibitory and activatory drug targets by chemically and genetically perturbed transcriptome signatures

Scientific reports, 2018-01, Vol.8 (1), p.156-156, Article 156

2018

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DINIES: drug-target interaction network inference engine based on supervised analysis

Nucleic acids research, 2014-07, Vol.42 (Web Server issue), p.W39

2014

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Target-Based Drug Repositioning Using Large-Scale Chemical–Protein Interactome Data

Journal of chemical information and modeling, 2015-12, Vol.55 (12), p.2717-2730

2015

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Elucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics

Scientific reports, 2017-01, Vol.7 (1), p.40164-40164, Article 40164

2017

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Benchmarking a Wide Range of Chemical Descriptors for Drug-Target Interaction Prediction Using a Chemogenomic Approach

Molecular informatics, 2014-12, Vol.33 (11-12), p.719-731

2014

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Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm

Bioinformatics, 2019-07, Vol.35 (14), p.i191-i199

2019

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Predicting therapeutic and side effects from drug binding affinities to human proteome structures

iScience, 2024-06, Vol.27 (6), p.110032, Article 110032

2024

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Pathway-Based Drug Repositioning for Cancers: Computational Prediction and Experimental Validation

Journal of medicinal chemistry, 2018-11, Vol.61 (21), p.9583-9595

2018

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Predicting target proteins for drug candidate compounds based on drug-induced gene expression data in a chemical structure-independent manner

BMC medical genomics, 2015-12, Vol.8 (82), p.82-82, Article 82

2015

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Large-Scale Prediction of Beneficial Drug Combinations Using Drug Efficacy and Target Profiles

Journal of chemical information and modeling, 2015-12, Vol.55 (12), p.2705-2716

2015

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Prediction of the Health Effects of Food Peptides and Elucidation of the Mode‐of‐action Using Multi‐task Graph Convolutional Neural Network

Molecular informatics, 2020-01, Vol.39 (1-2), p.e1900134-n/a

2020

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In silico systems for predicting chemical-induced side effects using known and potential chemical protein interactions, enabling mechanism estimation

The Journal of Toxicological Sciences, 2020, Vol.45(3), pp.137-149

2020

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KampoDB, database of predicted targets and functional annotations of natural medicines

Scientific reports, 2018-07, Vol.8 (1), p.11216-11, Article 11216

2018

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Differential effects of proton pump inhibitors and vonoprazan on vascular endothelial growth factor expression in cancer cells

Drug development research, 2023-02, Vol.84 (1), p.75-83

2023

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A trial of topiramate for patients with hereditary spinocerebellar ataxia

Clinical case reports, 2023-02, Vol.11 (2), p.e6980-n/a

2023

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Biological meaning of DNA compositional biases evaluated by ratio of membrane proteins

Journal of biochemistry (Tokyo), 2012-02, Vol.151 (2), p.189-196

2012

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Biological meaning of “habitable zone” in nucleotide composition space

Biophysics and Physicobiology, 2018, Vol.15, pp.75-85

2018

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What parameters characterize “life”?

Biophysics and Physicobiology, 2016, Vol.13, pp.305-310

2016

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Systematic Drug Repositioning for a Wide Range of Diseases with Integrative Analyses of Phenotypic and Molecular Data

Journal of chemical information and modeling, 2015-02, Vol.55 (2), p.446-459

2015

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Revealing Comprehensive Food Functionalities and Mechanisms of Action through Machine Learning

Journal of chemical information and modeling, 2024-07, Vol.64 (14), p.5712-5724

2024

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A class of chemical compounds enhances clustering of muscle nicotinic acetylcholine receptor in cultured myogenic cells

Biochemical and biophysical research communications, 2024-10, Vol.731, p.150400, Article 150400

2024

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Network-based characterization of drug-protein interaction signatures with a space-efficient approach

BMC systems biology, 2019-04, Vol.13 (Suppl 2), p.39, Article 39

2019

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Design and structural optimization of thiadiazole derivatives with potent GLS1 inhibitory activity

Bioorganic & medicinal chemistry letters, 2023-09, Vol.93, p.129438-129438, Article 129438

2023

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Human Genome Encodes Many Proteins with Charge Periodicity of 28 Residues

Japanese Journal of Applied Physics, 2007-09, Vol.46 (9R), p.6083

2007

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Vertebrate Genomes Code Excess Proteins with Charge Periodicity of 28 Residues

Journal of biochemistry (Tokyo), 2008-05, Vol.143 (5), p.661-665, Article 661

2008

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Predicting inhibitory and activatory drug targets by chemically and genetically perturbed transcriptome signatures

DINIES: drug-target interaction network inference engine based on supervised analysis

Target-Based Drug Repositioning Using Large-Scale Chemical–Protein Interactome Data

Elucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics

Benchmarking a Wide Range of Chemical Descriptors for Drug-Target Interaction Prediction Using a Chemogenomic Approach

Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm

Predicting therapeutic and side effects from drug binding affinities to human proteome structures

Pathway-Based Drug Repositioning for Cancers: Computational Prediction and Experimental Validation

Predicting target proteins for drug candidate compounds based on drug-induced gene expression data in a chemical structure-independent manner

Large-Scale Prediction of Beneficial Drug Combinations Using Drug Efficacy and Target Profiles

Prediction of the Health Effects of Food Peptides and Elucidation of the Mode‐of‐action Using Multi‐task Graph Convolutional Neural Network

In silico systems for predicting chemical-induced side effects using known and potential chemical protein interactions, enabling mechanism estimation

KampoDB, database of predicted targets and functional annotations of natural medicines

Differential effects of proton pump inhibitors and vonoprazan on vascular endothelial growth factor expression in cancer cells

A trial of topiramate for patients with hereditary spinocerebellar ataxia

Biological meaning of DNA compositional biases evaluated by ratio of membrane proteins

Biological meaning of “habitable zone” in nucleotide composition space

What parameters characterize “life”?

Systematic Drug Repositioning for a Wide Range of Diseases with Integrative Analyses of Phenotypic and Molecular Data

Revealing Comprehensive Food Functionalities and Mechanisms of Action through Machine Learning

A class of chemical compounds enhances clustering of muscle nicotinic acetylcholine receptor in cultured myogenic cells

Network-based characterization of drug-protein interaction signatures with a space-efficient approach

Design and structural optimization of thiadiazole derivatives with potent GLS1 inhibitory activity

Human Genome Encodes Many Proteins with Charge Periodicity of 28 Residues

Vertebrate Genomes Code Excess Proteins with Charge Periodicity of 28 Residues

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