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Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy

Science (American Association for the Advancement of Science), 2010-08, Vol.329 (5994), p.967-971

2010

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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

Nature communications, 2016-02, Vol.7 (1), p.8674-8674, Article 8674

2016

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Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction

eLife, 2017-01, Vol.6

2017

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Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

Scientific reports, 2019-02, Vol.9 (1), p.1835-1835, Article 1835

2019

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A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003670-e1003670

2014

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Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis

Bioinformatics (Oxford, England), 2021-09, Vol.37 (18), p.2946-2954

2021

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Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis

Bioinformatics (Oxford, England), 2021-09, Vol.37 (18), p.2946-2954

2021

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ZeGlobalTox: An Innovative Approach to Address Organ Drug Toxicity Using Zebrafish

International journal of molecular sciences, 2017-04, Vol.18 (4), p.864-864

2017

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Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

Scientific reports, 2019-12, Vol.9 (1)

2019

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Publisher Correction: Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

Scientific reports, 2019-12, Vol.9 (1)

2019

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An integrated modelling framework from cells to organism based on a cohort of digital embryos

Scientific reports, 2016-12, Vol.6 (1), p.37438-37438, Article 37438

2016

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High-content analysis of larval phenotypes for the screening of xenobiotic toxicity using Phallusia mammillata embryos

Aquatic toxicology, 2021-03, Vol.232, p.105768, Article 105768

2021

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Publisher Correction: Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

Scientific reports, 2019-05, Vol.9 (1), p.7699-1, Article 7699

2019

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Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis

Development (Cambridge), 2013-12, Vol.140 (24), p.4860-4869

2013

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3D+t Morphological Processing: Applications to Embryogenesis Image Analysis

IEEE transactions on image processing, 2012-08, Vol.21 (8), p.3518-3530

2012

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Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy

IEEE transactions on image processing, 2012-04, Vol.21 (4), p.2335-2340

2012

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A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis: e1003670

PLoS computational biology, 2014-06, Vol.10 (6)

2014

Volltextzugriff (PDF)

Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction

eLife, 2017-01, Vol.6

2017

Volltextzugriff (PDF)

Processing pipeline for digitalizing the lineage tree of early zebrafish embryogenesis from multiharmonic imaging

2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011, p.1561-1564

2011

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Can voronoi diagram model cell geometries in early sea-urchin embryogenesis?

2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, p.504-507

2008

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Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements

2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2009-01, Vol.2009, p.970-973

2009

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Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos

2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011-01, Vol.2011, p.6841-6844

2011

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Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification

2010 Annual International Conference of the IEEE Engineering in Medicine and Biology, 2010-01, Vol.2010, p.5520-5523

2010

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Combining sea urchin embryo cell lineages by error-tolerant graph matching

2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2009-01, Vol.2009, p.5918-5921

2009

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Prospective associations between white matter hyperintensities and lower extremity function

Neurology, 2018-04, Vol.90 (15), p.e1291

2018

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Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy

A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction

Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis

Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis

Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis

ZeGlobalTox: An Innovative Approach to Address Organ Drug Toxicity Using Zebrafish

Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

Publisher Correction: Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

An integrated modelling framework from cells to organism based on a cohort of digital embryos

High-content analysis of larval phenotypes for the screening of xenobiotic toxicity using Phallusia mammillata embryos

Publisher Correction: Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis

3D+t Morphological Processing: Applications to Embryogenesis Image Analysis

Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy

A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis: e1003670

Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction

Processing pipeline for digitalizing the lineage tree of early zebrafish embryogenesis from multiharmonic imaging

Can voronoi diagram model cell geometries in early sea-urchin embryogenesis?

Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos

Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification

Combining sea urchin embryo cell lineages by error-tolerant graph matching

Prospective associations between white matter hyperintensities and lower extremity function

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