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Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes

BMC genomics, 2015-08, Vol.16 (1), p.589-589, Article 589

2015

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A new strategy to reduce allelic bias in RNA-Seq readmapping

Nucleic acids research, 2012-09, Vol.40 (16), p.e127-e127

2012

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Comparison of somatic mutation calling methods in amplicon and whole exome sequence data

BMC genomics, 2014-03, Vol.15 (1), p.244-244, Article 244

2014

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A high-throughput pipeline for the design of real-time PCR signatures

BMC bioinformatics, 2010-06, Vol.11 (1), p.340-340, Article 340

2010

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Thermodynamic basis for the emergence of genomes during prebiotic evolution

PLoS computational biology, 2012-05, Vol.8 (5), p.e1002534-e1002534

2012

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A high-throughput pipeline for designing microarray-based pathogen diagnostic assays

BMC bioinformatics, 2008-04, Vol.9 (1), p.185-185, Article 185

2008

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Edge effects in calling variants from targeted amplicon sequencing

BMC genomics, 2014-12, Vol.15 (1), p.1073-1073

2014

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Quantitative analysis of differences in copy numbers using read depth obtained from PCR-enriched samples and controls

BMC bioinformatics, 2015-01, Vol.16 (1), p.17-17, Article 17

2015

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Development and Validation of an Ultradeep Next-Generation Sequencing Assay for Testing of Plasma Cell-Free DNA from Patients with Advanced Cancer

Clinical cancer research, 2017-09, Vol.23 (18), p.5648-5656

2017

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In silico microarray probe design for diagnosis of multiple pathogens

BMC genomics, 2008-10, Vol.9 (1), p.496-496, Article 496

2008

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16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles

Microbiome, 2014-09, Vol.2 (1), p.31-31, Article 31

2014

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AGeS: a software system for microbial genome sequence annotation

PloS one, 2011-03, Vol.6 (3), p.e17469-e17469

2011

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SNIT: SNP identification for strain typing

Source code for biology and medicine, 2011-09, Vol.6 (1), p.14-14, Article 14

2011

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Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA

Annals of oncology, 2020-06, Vol.31 (6), p.745-759

2020

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Constructing Near-Perfect Phylogenies with multiple homoplasy events

Bioinformatics, 2006-07, Vol.22 (14), p.e514-e522

2006

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Accelerating Biomedical Research in Designing Diagnostic Assays, Drugs, and Vaccines

Computing in science & engineering, 2010-09, Vol.12 (5), p.46-55

2010

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PTAP motif duplication in the p6 Gag protein confers a replication advantage on HIV-1 subtype C

The Journal of biological chemistry, 2018-07, Vol.293 (30), p.11687-11708

2018

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Abstract 3404: Landscape and genomic correlates of ctDNA-based tumor mutational burden across six solid tumor types

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.3404-3404

2019

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Abstract 3656: Target enrichment of methylated circulating tumor DNA for colorectal cancer detection

Cancer research (Chicago, Ill.), 2024-03, Vol.84 (6_Supplement), p.3656-3656

2024

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Abstract 729: Landscape of homologous recombination repair (HRR) mutations in prostate cancer profiled by ctDNA next-generation sequencing

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.729-729

2020

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Abstract 4879: Reducing amplification artifacts in highly multiplex amplicon sequencing by using molecular barcodes

Cancer research (Chicago, Ill.), 2015-08, Vol.75 (15_Supplement), p.4879-4879

2015

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Abstract 5015: Precision profile simulation study for a next generation sequencing bTMB assay

Cancer research (Chicago, Ill.), 2022-06, Vol.82 (12_Supplement), p.5015-5015

2022

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Cell-free DNA (cfDNA) mutations from clonal hematopoiesis: Implications for interpretation of liquid biopsy tests

Journal of clinical oncology, 2017-05, Vol.35 (15_suppl), p.11526-11526

2017

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Abstract LB-343: Development of plasma cell-free DNA (cfDNA) assays for early cancer detection: first insights from the Circulating Cell-Free Genome Atlas Study (CCGA)

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.LB-343-LB-343

2018

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Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes

A new strategy to reduce allelic bias in RNA-Seq readmapping

Comparison of somatic mutation calling methods in amplicon and whole exome sequence data

A high-throughput pipeline for the design of real-time PCR signatures

Thermodynamic basis for the emergence of genomes during prebiotic evolution

A high-throughput pipeline for designing microarray-based pathogen diagnostic assays

Edge effects in calling variants from targeted amplicon sequencing

Quantitative analysis of differences in copy numbers using read depth obtained from PCR-enriched samples and controls

Development and Validation of an Ultradeep Next-Generation Sequencing Assay for Testing of Plasma Cell-Free DNA from Patients with Advanced Cancer

In silico microarray probe design for diagnosis of multiple pathogens

16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles

AGeS: a software system for microbial genome sequence annotation

SNIT: SNP identification for strain typing

Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA

Constructing Near-Perfect Phylogenies with multiple homoplasy events

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

Accelerating Biomedical Research in Designing Diagnostic Assays, Drugs, and Vaccines

PTAP motif duplication in the p6 Gag protein confers a replication advantage on HIV-1 subtype C

Abstract 3404: Landscape and genomic correlates of ctDNA-based tumor mutational burden across six solid tumor types

Abstract 3656: Target enrichment of methylated circulating tumor DNA for colorectal cancer detection

Abstract 729: Landscape of homologous recombination repair (HRR) mutations in prostate cancer profiled by ctDNA next-generation sequencing

Abstract 4879: Reducing amplification artifacts in highly multiplex amplicon sequencing by using molecular barcodes

Abstract 5015: Precision profile simulation study for a next generation sequencing bTMB assay

Cell-free DNA (cfDNA) mutations from clonal hematopoiesis: Implications for interpretation of liquid biopsy tests

Abstract LB-343: Development of plasma cell-free DNA (cfDNA) assays for early cancer detection: first insights from the Circulating Cell-Free Genome Atlas Study (CCGA)

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