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Testing microbiome associations with survival times at both the community and individual taxon levels

PLoS computational biology, 2022-09, Vol.18 (9), p.e1010509-e1010509

2022

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Age-associated DNA methylation in pediatric populations

Genome research, 2012-04, Vol.22 (4), p.623

2012

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MIDASim: a fast and simple simulator for realistic microbiome data

Microbiome, 2024-07, Vol.12 (1), p.135-14, Article 135

2024

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Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis

PloS one, 2016-01, Vol.11 (1), p.e0146939

2016

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Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls

PLoS genetics, 2016-05, Vol.12 (5), p.e1006040-e1006040

2016

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A Permutation Procedure to Correct for Confounders in Case-Control Studies, Including Tests of Rare Variation

American journal of human genetics, 2012-08, Vol.91 (2), p.215-223

2012

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Associations between microbial communities and key chemical constituents in U.S. domestic moist snuff

PloS one, 2022-05, Vol.17 (5), p.e0267104

2022

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Ranked severe maternal morbidity index for population-level surveillance at delivery hospitalization based on hospital discharge data

PloS one, 2023-11, Vol.18 (11), p.e0294140-e0294140

2023

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Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data

Microbiome, 2021-06, Vol.9 (1), p.133-133, Article 133

2021

Volltextzugriff (PDF)

Impact of Experimental Bias on Compositional Analysis of Microbiome Data

Genes, 2023-09, Vol.14 (9), p.1777

2023

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Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women

Frontiers in cellular and infection microbiology, 2021-04, Vol.11, p.641005

2021

Volltextzugriff (PDF)

Restoring the Duality between Principal Components of a Distance Matrix and Linear Combinations of Predictors, with Application to Studies of the Microbiome

PloS one, 2017-01, Vol.12 (1), p.e0168131-e0168131

2017

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Inference on Haplotype Effects in Case-Control Studies Using Unphased Genotype Data

American journal of human genetics, 2003-12, Vol.73 (6), p.1316-1329

2003

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Testing hypotheses about the microbiome using the linear decomposition model (LDM)

Bioinformatics, 2020-08, Vol.36 (14), p.4106-4115

2020

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What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?

Genes, 2022-09, Vol.13 (10), p.1758

2022

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Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure

PeerJ (San Francisco, CA), 2019-11, Vol.7, p.e8004, Article e8004

2019

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LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control

Proceedings of the National Academy of Sciences - PNAS, 2022-07, Vol.119 (30), p.e2122788119-e2122788119

2022

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Late Preterm Birth and Risk of Developing Asthma

The Journal of pediatrics, 2010-07, Vol.157 (1), p.74-78

2010

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A rarefaction-based extension of the LDM for testing presence–absence associations in the microbiome

Bioinformatics, 2021-07, Vol.37 (12), p.1652-1657

2021

Volltextzugriff (PDF)

Compositional analysis of microbiome data using the linear decomposition model (LDM)

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11)

2023

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A rarefaction-without-resampling extension of PERMANOVA for testing presence–absence associations in the microbiome

Bioinformatics, 2022-08, Vol.38 (15), p.3689-3697

2022

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Integrative analysis of relative abundance data and presence-absence data of the microbiome using the LDM

Bioinformatics (Oxford, England), 2022-05, Vol.38 (10), p.2915-2917

2022

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Accounting for Unmeasured Population Substructure in Case-Control Studies of Genetic Association Using a Novel Latent-Class Model

American journal of human genetics, 2001-02, Vol.68 (2), p.466-477

2001

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Utilizing Population Controls in Rare-Variant Case-Parent Association Tests

American journal of human genetics, 2014-06, Vol.94 (6), p.845-853

2014

Volltextzugriff (PDF)

Integrative analysis of relative abundance data and presence–absence data of the microbiome using the LDM

Bioinformatics, 2022-05, Vol.38 (10), p.2915-2917

2022

Volltextzugriff (PDF)

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Testing microbiome associations with survival times at both the community and individual taxon levels

Age-associated DNA methylation in pediatric populations

MIDASim: a fast and simple simulator for realistic microbiome data

Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis

Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls

A Permutation Procedure to Correct for Confounders in Case-Control Studies, Including Tests of Rare Variation

Associations between microbial communities and key chemical constituents in U.S. domestic moist snuff

Ranked severe maternal morbidity index for population-level surveillance at delivery hospitalization based on hospital discharge data

Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data

Impact of Experimental Bias on Compositional Analysis of Microbiome Data

Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women

Restoring the Duality between Principal Components of a Distance Matrix and Linear Combinations of Predictors, with Application to Studies of the Microbiome

Inference on Haplotype Effects in Case-Control Studies Using Unphased Genotype Data

Testing hypotheses about the microbiome using the linear decomposition model (LDM)

What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?

Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure

LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control

Late Preterm Birth and Risk of Developing Asthma

A rarefaction-based extension of the LDM for testing presence–absence associations in the microbiome

Compositional analysis of microbiome data using the linear decomposition model (LDM)

A rarefaction-without-resampling extension of PERMANOVA for testing presence–absence associations in the microbiome

Integrative analysis of relative abundance data and presence-absence data of the microbiome using the LDM

Accounting for Unmeasured Population Substructure in Case-Control Studies of Genetic Association Using a Novel Latent-Class Model

Utilizing Population Controls in Rare-Variant Case-Parent Association Tests

Integrative analysis of relative abundance data and presence–absence data of the microbiome using the LDM

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